[aroma.affymetrix] Re: Schott Reflective slides COMMERCIAL response

2010-01-08 Thread agrees
Dear Jacob, There is another yahoo groups that is probably a better place to ask your question: http://tech.groups.yahoo.com/group/microarray/ However, there are a number of publications citing the use of the SCHOTT Nexterion reflective (HiSens) slides: Expression of microRNA-221 is progressive

[aroma.affymetrix] firma score comparison

2010-01-08 Thread sabrina
Hi, all: A quick question. I know after we extract frima score, I should use eBayes to do the following: assume we have design matrix and contrast matrix, fit<-lmFit(exFirma,design) fit2<-contrasts.fit(fit,cont.matrix); fit2<-eBayes(fit2,proportion=p); the default setting for p is 0.01 that is fo