Hi Zaid.
Bit hard to tell from the information you've given us.
So, you built a custom CDF file. Did you check its contents? For
example, you could do:
cdf - AffymetrixCdfFile()
readCdf( getPathname(cdf), units=1:2 )
... and you could check that the indices/X-Y values match what your
Hi Randy.
From that error message, it looks like there was a mix of CDF files
being used (my guess is 54675 corresponds to the number of Affymetrix
probesets, whereas 30625 corresponds to the Refseq reorganization of
probesets). Can you post the code you ran?
Cheers,
Mark
On 16-Jan-10,
