Re: [aroma.affymetrix] Re: a question about FIRMA score

2010-01-10 Thread Mark Robinson
Hi Jiang. You need to take the log2 of the residuals. CEL files store only positive numbers. This question has been answered many times. For starters, have a look at: http://www.mail-archive.com/aroma-affymetrix@googlegroups.com/msg01015.html Cheers, Mark On 8-Jan-10, at 2:53 AM,

[aroma.affymetrix] Re: a question about FIRMA score

2010-01-07 Thread camelbbs
Hi, can anyone help? Jiang On Jan 5, 9:47 am, camelbbs camel...@gmail.com wrote: HI, I found the FIRMA scores are all 0, so what do you mean the positive or negative? and i am not very understand this sentence it seems logical to find FIRMA scores that are different b/w your 2+ groups. That