[aroma.affymetrix] Re: what kind of file

2010-04-02 Thread dkny169
That's really strange! I mean by the file seems fine that I can see the content of the file, which looks like this: cat MoGene-1_0-st-v1.probe.tab |head Probe IDTranscript Cluster ID probe x probe y assemblyseqname start stopstrand probe sequence target strandedness ca

Re: [aroma.affymetrix] Re: what kind of file

2010-04-01 Thread Mark Robinson
Hi Daniela. That's strange. And no, these files do not need to be in a particular directory (In fact, this error is completely independent of the aroma.affmetrix package). The error you get suggests the file is empty. When you say it "seems to be fine", what does that mean? Alternatively, what

[aroma.affymetrix] Re: what kind of file

2010-04-01 Thread dkny169
So far I have managed to nearly run everything of the script. I do though have issues in loading the probe sequences. Do the files need to be stored in a particular folder? For now I have it in ./annotationData/chipTypes/ as I have seen someone else in this forum doing it like this. What else could