Hi Kripa.
Have a look at the Affymetrix website:
http://www.affymetrix.com/estore/browse/products.jsp?productId=131452&categoryId=35676&productName=GeneChip-Human-Exon-1.0-ST-Array#1_3
Click on "Technical Documentation" and the file you are probably after is
"HuEx-1_0-st-v2 Transcript Cluster A
Hi,
I'm very new to microarray analysis and I fear I'm in too deep by starting
with the HuEx1_0-st-v2 chip, especially since no one in my building seems to
have conducted this analysis!
Experiment currently: 2 chips have been analyzed and have had the same
treatment, I'm looking to confirm that th
Hi Yu Chuan.
Comments below.
On 24-Nov-09, at 1:00 PM, Yu Chuan wrote:
> Hi,
>
> I am pre-processing 8 exon arrays (Hu-Ex-1_0-st-v2) and doing quality
> assessment. When I plotted the NUSE using plotNUSE, I found that the
> y-
> axis limit is too wide, such that the boxplots were all squeezed
Hi,
I am pre-processing 8 exon arrays (Hu-Ex-1_0-st-v2) and doing quality
assessment. When I plotted the NUSE using plotNUSE, I found that the y-
axis limit is too wide, such that the boxplots were all squeezed
tightly around 0 and it's hard to see what's going on there. Is there
any way I can cha
Dear all,
I am analysing a set of exon array data, and have been following the
human exon array analysis vignette, but am having trouble getting the
firma scores
After the firma analysis, I get a table full of NaN's.
> firma <- FirmaModel(plmTr)
> fit(firma, verbose=verbose)
> fs <- getFirmaSco
