Abhinay
We use MUMmer to generate those comparison files. Scripts available at our free
public galaxy instance (http://galaxy.wur.nl) can convert those for you to
readable files for ACT. Like WebACT does...
Look in the tool section WUR-tools::MUMmer/Artemis. You may find some more
handy things
Tim,
which FeaTure key would be best to use when wanting hyperlinked db refs? Is
there some convention?
/db_xref=GI:somenumber?
Alex
Van: Bossers, Alex
Verzonden: woensdag 11 april 2012 22:31
To: Tim Carver; artemis-users@sanger.ac.uk
Onderwerp: RE
Hi
I am playing around again with multiple annotation tracks in Artemis latest
version locally...
I managed to get BLAST results in the annotation as well as other EMBL FT.
I wondered is it possible to get for let's say a limited BLAST to 4 matches
each entry, to display all those 4 as
To: Bossers, Alex; artemis-users@sanger.ac.uk
Onderwerp: Re: Artemis and multiple (interactive) annotation tracks
Hi Alex
I am not sure of the best way to limit the number of hits to an ORF but you
may be interested in a new view which is in development at the moment in
Artemis. It displays overlapped
Alternatively (as we do it) we generate an EMBL FT track containing the layout
of contigs (incl any rev complementing and/or linkers). Works quite well for us
and keeps comparison files clean/original.
ALex
-Oorspronkelijk bericht-
Van: artemis-users-boun...@sanger.ac.uk
Hi
is there a way to change the spacing/interval of the nt scale in ACT to some
custom value?
Thanks
Alex
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