Philippe Rocca-Serra writes:
> Hi Everyone,
>
> As Dominic pointed out, we are working anyway on an import into BASE2
> using tab2mage format in the short time (see ticket 338), and once
> MAGE-TAB specifications are stable move on to support this format too.
excellent!
> There is a M
Hi Everyone,
As Dominic pointed out, we are working anyway on an import into BASE2
using tab2mage format in the short time (see ticket 338), and once
MAGE-TAB specifications are stable move on to support this format too.
There is a MAGE-TAB jamboree happening in Philadelphia next week, so I
wi
Hi,
this is an interesting problem and one we have been dealing with at
ArrayExpress as well. For really large experiments the only thing that
that has worked for submissions is a spreadsheet - currently we use
tab2mage for this purpose. *tab2mage*.sourceforge.net/
You might think about an i
A command line bulk importer ... well, we are just starting to look at
adding remote services to BASE. Web services or something similar might
be useful in this context.
Jari
Bob MacCallum wrote:
> Hi Micha and others,
>
> Of course we have to share the workload. I'd rather help develop some
There is a possibility to get access to the subversion repository and
trac environment just for this kind of stuff. Check out
http://baseplugins.thep.lu.se Trac environment allows for discussions
about the importer through the ticketing system.
Jari
Micha Bayer wrote:
> That sounds like a he
Micha Bayer a écrit :
> Hi Emmanuel,
>
> The Catalina/work directory caches copies of your compiled JSP pages. It
> looks from the stacktrace like the JSP compiler can't write to the work
> directory because you don't have permissions to it -- check what they
> are set to.
>
Right, Micha, some
Hi Micha and others,
Of course we have to share the workload. I'd rather help develop something
that is already taking shape (because I'm still not very familiar with the
API). Let's see what people think about MAGE-TAB etc, but hopefully I can
carry on where you leave off. That's not a 100% c
Micha Bayer wrote:
>
> So am I right in thinking that if I change this to the following...
>
>
> public class ZipFileImporter extends AbstractPlugin implements
> InteractivePlugin, AutoDetectingImporter
> {
> private static final Set guiContexts =
> Collections.singleton(n
Hi,
>public class ZipFileImporter extends AbstractPlugin implements
InteractivePlugin, AutoDetectingImporter {
> private static final Set guiContexts =
> Collections.singleton(new GuiContext(Item.EXPERIMENT,
GuiContext.Type.ITEM));
>
>then I'll get an import tab created
Hi Emmanuel,
The Catalina/work directory caches copies of your compiled JSP pages. It
looks from the stacktrace like the JSP compiler can't write to the work
directory because you don't have permissions to it -- check what they
are set to.
Cheers
Micha
==
Dr Mi
That sounds like a hell of a lot more work than what I have done so far :-)
My first shot at this has been quite basic and it only creates new RawBioAssays
and a single Experiment that these belong to. It could of course be extended to
do more stuff, but my time allowance for this is limited
Emmanuel Courcelle wrote:
> Hi all.
> Sorry to bother you again with this point, but I still does not
> understand everything...
>
> I tried to define a new type, called "float colored": it is a float,
> colored with min value as 0, max as 0, mid as 5
> I want to add 2 values to my data:
> -2 *
Hi all.
Sorry to bother you again with this point, but I still does not
understand everything...
I tried to define a new type, called "float colored": it is a float,
colored with min value as 0, max as 0, mid as 5
I want to add 2 values to my data:
-2 * (ch(1) / ch(2))
-3 * (ch(1) / ch(2))
(Prob
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