[base] How are string extra value types used in JEP extra value plugin?

2007-03-29 Thread Collett, James R
Hello All, I've been trying out the JEP extra value calculator plugin in BASE 2.1.2, and it works quite well for float and integer data types. The expression builder in the plugin, however, appears to only accommodate numerical values. Accordingly, I can't figure out what the string extra v

Re: [base] multi-experiment processed data summaries

2007-03-29 Thread Nicklas Nordborg
Bob MacCallum wrote: > Developers: are there any plans for BASE2 web gui plugins? Well, yes and no. It is something that we would like to have and we have a ticket for it (http://base.thep.lu.se/ticket/436). At the moment it is not top-priority though so it is difficult to say when (and if) i

Re: [base] multi-experiment processed data summaries

2007-03-29 Thread Bob MacCallum
Thanks for your comments, Emil. > Sorry, my bad - thought you meant something similar to the MeV > webstart application in BASE 2.2. > > Still, would it not need to do authentication, data import, etc in a > more extensive fashion than a plug-in (feel free to correct me on > this)? A

Re: [base] Questions on Reporter IDs

2007-03-29 Thread Emil Lundberg
> We are in the process of integrating GenePattern > (http://www.broad.mit.edu/cancer/software/genepattern/) with BASE > 2, and > once we have a solution working we'll be happy to place it in the > public > domain. > > GenePattern supports all the things you are asking for below, and we > like

Re: [base] multi-experiment processed data summaries

2007-03-29 Thread Emil Lundberg
27 mar 2007 kl. 11.46 skrev Bob MacCallum: > >> Now I can't speak for the BASE developers, but in my view, plug-ins >> are what makes BASE tick, so my advice is to go for the plug-in >> rather than the stand-alone app, if feasible. This way, you can make >> use of all the BASE facilities for auth

Re: [base] Batch Data Importer plugin dev future?

2007-03-29 Thread Micha Bayer
Hi Jim We never actually got this far in the discussion on Monday, but I have since spoken to Dominic Oyeniran from the EBI who has developed a first version of the Tab2MAGE exporter module and he says that he will now work on the Tab2MAGE importer next (he is on this list too BTW). We have agre