On 8/1/07, Nicklas Nordborg <[EMAIL PROTECTED]> wrote:
> Jeremy Davis-Turak wrote:
> > Hi Nicklas,
> >
> > I uploaded some data files to the Ticket.
>
> Thanks a lot! That was exactly what we needed.
>
> >
> > Here is a brief summary of what the d
hard-code the number of data columns per
array, and the number of arrays per chip.
Thanks for making this plugin!
Jeremy
On 7/31/07, Nicklas Nordborg <[EMAIL PROTECTED]> wrote:
> Nicklas Nordborg wrote:
> > Jeremy Davis-Turak wrote:
> >> I have implemented the incorporat
?
Also, in the Project view, what items are supposed to be shown in the
Item tab? I can never see anything here.
Thanks,
Jeremy Davis-Turak
-
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OK, I got it to work.
I had to delete the original plugin as root, even though I created it as
another user.
Once I put the correct path in, was fine.
Nice work Micha!
-Jeremy
On 3/16/07, Nicklas Nordborg < [EMAIL PROTECTED]> wrote:
Jeremy Davis-Turak wrote:
> Ok, so I made
nts (base
2.1.1). Does this appear only after the batch importer is correctly
installed?
2) I can 'remove' the batch data importer, but it doesn't appear in the
trashcan. Is this what Micha was talking about earlier?
Jeremy
On 3/15/07, Nicklas Nordborg <[EMAIL PROTECTED]> wro
On 3/14/07, Nicklas Nordborg <[EMAIL PROTECTED]> wrote:
> Can someone please give us a hint about how to reproduce this behavior?
> When I add a new plugin, BASE will complain if I enter an incorrect path.
Nicklas,
To reproduce this error, I would try creating the definition with the
wrong path.
Hi,
I am trying to install the batch data importer but I get the following error:
"Duplicate entry 'sbrn.base.BatchDataImporter' for key 2"
(I tried doing it once but I typed the wrong path; now that I do it
again I get this error).
Below is the stack trace. Please help!
Thanks,
Jeremy
Versio
Hi Steve,
I haven't tried the batch data importer yet, but keep in mind that in order
to use it, you need to create a regular raw data importer for your data
type.
Jeremy
On 3/9/07, Steve Taylor <[EMAIL PROTECTED]> wrote:
Hi,
>
> Oops! I added the files from the wrong version of BASE on our
Hi Steve,
Oops! I added the files from the wrong version of BASE on our server. I
just added the correct ones.
Jeremy
On 3/8/07, Steve Taylor <[EMAIL PROTECTED]> wrote:
Hi Jeremy,
> I attached the necessary files to the open ticket.
> http://base.thep.lu.se/ticket/486
> We may be working w
Hi Steve,
I attached the necessary files to the open ticket.
http://base.thep.lu.se/ticket/486
We may be working with some programmers soon to help us with specific
plugins, so this would definitely be something on our list of to-dos.
Jeremy
On 3/7/07, Nicklas Nordborg <[EMAIL PROTECTED]> wrot
I have implemented the incorporation of Illumina data into our BASE system,
along with a raw data importer. Our version requires that the
gene_profile.csv be split up into separate files, which we have done with an
R script. This can also be done manually in excel, or feasibly in a BASE
script.
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