As part of exporting a bioassay sets file with BASEFileExporter we normally
select average of reporters.
We are currently trying to export a dataset that is bigger than previous
datasets. We are working with a dataset of 200 32k slides.
If we select average of reporters, we only get a short file
thanks
From: Nicklas Nordborg nick...@thep.lu.se
To: BASE ML basedb-users@lists.sourceforge.net
Sent: Sunday, 14 June, 2009 23:14:28
Subject: Re: [base] Error when exporting bioassay information from an experiment
Louise Donnison wrote:
I have created
I have created a bioassay set in an experiment and under the Bioassays tab have
a list of the bioassays and the experimental factor values (which have been
bulk inherited from a biosource on the experiment page).
When I try to export a file I get this error rba property not resolvable (raw
Great using 1 worked!
Thanks
From: Nicklas Nordborg nick...@thep.lu.se
To: BASE ML basedb-users@lists.sourceforge.net
Sent: Sunday, 8 February, 2009 22:58:08
Subject: Re: [base] Lowess normalisation - Block parameter
Louise Donnison wrote:
Hi
I have been
Hi
I have been trying to normalise with block size 48 using the Lowess
normalization plugin. It does not appear to work for me.
It gives the same result as if I use block size 0.
I have been looking at LowessNormalisation code.
The spot spot data is ofsize 17328 split over 48 blocks.
When the
Hi
We have some raw bioassays in an experiment and I am trying to work out how to
use the analysis plugins.
We can run the Formula intensity calculator Mean FG - Mean BG to create a
BioAssay set.
We can run the Filter plugin to filter out flagged values and the JEP intensity
transformer to set
Thanks for your quick reply
From: Nicklas Nordborg [EMAIL PROTECTED]
To: BASE ML basedb-users@lists.sourceforge.net
Sent: Wednesday, 3 December, 2008 23:22:53
Subject: Re: [base] Imagene files with BASE
Louise Donnison wrote:
Has anyone any experience
