Re: [base] 2 bugs

2008-04-03 Thread david vilanova
Great, thanks for the fix. david 2008/4/3, Bob MacCallum <[EMAIL PROTECTED]>: > > > Hi David, > > The second problem you note will be fixed in 2.6.2 (I reported it very > recently as http://base.thep.lu.se/ticket/963). You can get the fixed > code > already by checking out "BASE stable" as per th

[base] 2 bugs

2008-04-03 Thread Bob MacCallum
Hi David, The second problem you note will be fixed in 2.6.2 (I reported it very recently as http://base.thep.lu.se/ticket/963). You can get the fixed code already by checking out "BASE stable" as per the download page instructions. I have tested it and it works. I do see similar behaviour to y

Re: [base] some base 2 bugs/features (raw data and array design import)

2007-04-24 Thread Nicklas Nordborg
> > In the meantime you can try using a splitter regexp that also removes > > white-space. Try something like \s*\t\s* instead of just \t. I have not > > tested this but it might be enough to make it work. > > I guessed there would be a neat trick like this, but couldn't think of it last > ni

Re: [base] some base 2 bugs/features (raw data and array design import)

2007-04-24 Thread Bob MacCallum
Hi Nicklas, Thanks for the reply. Nicklas Nordborg writes: > > 2. I think there's some inconsistent handling of trailing spaces in the > >"reporter ID" column of a genepix .gpr file. For example I can import > >reporters, and create an array design from the file pasted below, but I

Re: [base] some base 2 bugs/features (raw data and array design import)

2007-04-23 Thread Nicklas Nordborg
Bob MacCallum wrote: > Hi, > > I just spent the afternoon getting to know the array design and raw data > import into BASE2 - starting with genepix format - and have come across a few > things. > > I'm using BASE 2.2.2 (build #3172; schema #30). I have looked through the > fixes for 2.2.3 and de

[base] some base 2 bugs/features (raw data and array design import)

2007-04-23 Thread Bob MacCallum
Hi, I just spent the afternoon getting to know the array design and raw data import into BASE2 - starting with genepix format - and have come across a few things. I'm using BASE 2.2.2 (build #3172; schema #30). I have looked through the fixes for 2.2.3 and decided not to upgrade - otherwise I'l