Re: [base] JEP plugins

2009-01-29 Thread Jari Häkkinen
Hi Louise, Maybe you should look into the http://baseplugins.thep.lu.se/wiki/net.sf.basedb.normalizers package for inspiration on how to create a plug-in for your needs. Jari Nicklas Nordborg wrote: Louise Donnison wrote: Hi We have some raw bioassays in an experiment and I am trying

Re: [base] JEP plugins

2009-01-24 Thread Nicklas Nordborg
Louise Donnison wrote: Hi We have some raw bioassays in an experiment and I am trying to work out how to use the analysis plugins. We can run the Formula intensity calculator Mean FG - Mean BG to create a BioAssay set. We can run the Filter plugin to filter out flagged values and the JEP

[base] JEP plugins

2009-01-23 Thread Louise Donnison
Hi We have some raw bioassays in an experiment and I am trying to work out how to use the analysis plugins. We can run the Formula intensity calculator Mean FG - Mean BG to create a BioAssay set. We can run the Filter plugin to filter out flagged values and the JEP intensity transformer to set