clean.
Jari
Micha Bayer wrote:
>> -Original Message-
>> From: [EMAIL PROTECTED] [mailto:basedb-users-
>> [EMAIL PROTECTED] On Behalf Of Jari Häkkinen
>> Sent: 30 November 2006 15:42
>> To: BASE ML
>> Subject: Re: [base] Offline files
>>
>
> -Original Message-
> From: [EMAIL PROTECTED] [mailto:basedb-users-
> [EMAIL PROTECTED] On Behalf Of Jari Häkkinen
> Sent: 30 November 2006 15:42
> To: BASE ML
> Subject: Re: [base] Offline files
>
> There is a possibility to get access to the subversi
InteractivePlugin, AutoDetectingImporter
> >>> {
> >>> private static final Set guiContexts =
> >>> Collections.singleton(new GuiContext(Item.EXPERIMENT,
> >>> GuiContext.Type.ITEM));
> >>>
> >>>
> >>> ....then I'll get an import tab created in
gt;> then I'll get an import tab created in the Experiment list view which
>>> will let me import the zip file using my plugin?
>>>
>>> We're planning to make the Excel plugin available for everyone too BTW,
>>> once it's finished.
>>>
>&g
gt; Cheers
>> Micha
>>
>> ==
>> Dr Micha M Bayer
>> Bioinformatics Specialist
>> Genetics Programme
>> The Scottish Crop Research Institute
>> Invergowrie
>> Dundee
>> DD2 5DA
>> Scotland, UK
>> Tele
oo BTW,
> once it's finished.
> >
> > Cheers
> > Micha
> >
> > ==
> > Dr Micha M Bayer
> > Bioinformatics Specialist
> > Genetics Programme
> > The Scottish Crop Research Institute
> > Invergowrie
> > D
a M Bayer
> Bioinformatics Specialist
> Genetics Programme
> The Scottish Crop Research Institute
> Invergowrie
> Dundee
> DD2 5DA
> Scotland, UK
> Telephone +44(0)1382 562731 ext. 2309
> Fax +44(0)1382 562426
> http://www.scri.sari.ac.uk/MichaBayer.htm
> ===
er
> Bioinformatics Specialist
> Genetics Programme
> The Scottish Crop Research Institute
> Invergowrie
> Dundee
> DD2 5DA
> Scotland, UK
> Telephone +44(0)1382 562731 ext. 2309
> Fax +44(0)1382 562426
> http://www.scri.sari.ac.uk/MichaBayer.htm
> =
>
>
Micha Bayer wrote:
>
> So am I right in thinking that if I change this to the following...
>
>
> public class ZipFileImporter extends AbstractPlugin implements
> InteractivePlugin, AutoDetectingImporter
> {
> private static final Set guiContexts =
> Collections.singleton(n
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Micha Bayer
Sent: 30 November 2006 09:52
To: BASE ML
Subject: Re: [base] Offline files
That sounds like a hell of a lot more work than what I have done so far
:-)
My first shot at this has been quite basic and it only creates new
> -Original Message-
> From: [EMAIL PROTECTED] [mailto:basedb-users-
> [EMAIL PROTECTED] On Behalf Of Bob MacCallum
> Sent: 29 November 2006 18:36
> To: BASE ML
> Subject: Re: [base] Offline files
>
>
> It looks like I let the cat out of the bag on this one...
>
I think a bulk importer is essential. We have found that all users enter
data in bulk. They set aside some time to enter a set of data, usually from
the same experiment. Having the user enter each chip individually leads to
user frustration and clerical errors.
We created a bulk uploader which tak
ovember 2006 14:40
> > To: BASE ML
> > Subject: Re: [base] Offline files
> >
> > Jari Häkkinen wrote:
> > > Hi all,
> > >
> > > Just a thought, I think the best choice to trigger a large import like
> > > this is to create a plug-in
> -Original Message-
> From: [EMAIL PROTECTED] [mailto:basedb-users-
> [EMAIL PROTECTED] On Behalf Of Nicklas Nordborg
> Sent: 29 November 2006 14:40
> To: BASE ML
> Subject: Re: [base] Offline files
>
> Jari Häkkinen wrote:
> > Hi all,
> >
> >
> -Original Message-
> From: [EMAIL PROTECTED] [mailto:basedb-users-
> [EMAIL PROTECTED] On Behalf Of Nicklas Nordborg
> Sent: 29 November 2006 14:40
> To: BASE ML
> Subject: Re: [base] Offline files
>
> Jari Häkkinen wrote:
> > Hi all,
> >
> >
Micha Bayer wrote:
> Hi Jari,
>
> That sounds perfectly reasonable when you put it like this, but I was put off
> going down that route by a post to the list from Nicklas
> (http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg00228.html)
> where he says that it is best to not us
Micha Bayer wrote:
> Hi Jari,
>
> That sounds perfectly reasonable when you put it like this, but
> I was put off going down that route by a post to the list from
> Nicklas
http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg00228.html)
> where he says that it is best to not u
Micha Bayer wrote:
> I am just talking to my boss about code ownership issues but I can
> probably offer up my stuff one way or another, and people can then
> either cannibalise it and turn it into a plugin, or adopt it (or a
> modified version) into the core etc etc -- happy with any solution
Ah, even better ;-)
Nicklas Nordborg wrote:
> Jari Häkkinen wrote:
>> Hi all,
>>
>> Just a thought, I think the best choice to trigger a large import like
>> this is to create a plug-in instead of adding extra tabs to the file
>> browser. The plug-in should start by requesting the zip file/dire
Jari Häkkinen wrote:
> Hi all,
>
> Just a thought, I think the best choice to trigger a large import like
> this is to create a plug-in instead of adding extra tabs to the file
> browser. The plug-in should start by requesting the zip file/directory
> to import. If the zip file is not already u
f Of Jari Häkkinen
> Sent: 29 November 2006 14:14
> To: BASE ML
> Subject: Re: [base] Offline files
>
> Hi all,
>
> Just a thought, I think the best choice to trigger a large import like
> this is to create a plug-in instead of adding extra tabs to the file
> browser. Th
Hello everybody,
thank you for you replies. I'll transform my questions in suggestions:
1) data batch downloading would be great, since this is a pretty
basic task, many experiments have 30+ arrays, and right now the user
needs two clicks for each.
2) it is extremely misleading, to have a delet
Hi all,
Just a thought, I think the best choice to trigger a large import like
this is to create a plug-in instead of adding extra tabs to the file
browser. The plug-in should start by requesting the zip file/directory
to import. If the zip file is not already uploaded the user will have an
op
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Micha Bayer
Hi Micha,
>I have just finished writing one. The user uploads a zip file, a new
directory is created in the user's raw data directory (with >the same name
as the zip file) and the files are
:
-Original Message-
From: [EMAIL PROTECTED] [mailto:basedb-users-
[EMAIL PROTECTED] On Behalf Of Bob MacCallum
Sent: 29 November 2006 10:15
To: BASE ML
Subject: Re: [base] Offline files
[...]
At some point, someone will come up with a bulk loader which will
batch/bulk/mass upload
> -Original Message-
> From: [EMAIL PROTECTED] [mailto:basedb-users-
> [EMAIL PROTECTED] On Behalf Of Bob MacCallum
> Sent: 29 November 2006 10:15
> To: BASE ML
> Subject: Re: [base] Offline files
[...]
> At some point, someone will come up with a bulk loader wh
Emmanuel Courcelle wrote:
> What does mean to "move offline" ?
> Is it the same as: Delete THEN Empty trash ?
>
No it is not. A file exists in two places. As an entry in the database
and as a file on the disk.
The "Move offline" feature is used when you want to delete the file on
disk but keep
What does mean to "move offline" ?
Is it the same as: Delete THEN Empty trash ?
--
Emmanuel COURCELLE[EMAIL PROTECTED]
L.I.P.M. (UMR CNRS-INRA 2594/441) tel (33) 5-61-28-54-50
B.P.52627 - 31326 CASTANET TOLOSAN Cedex - FRANCE
--
-
Bob MacCallum wrote:
>
> Nicklas Nordborg writes:
> > Giovanni Coppola wrote:
> > > Hi everybody,
> > > I have two questions:
> > > 1) is there a way to download images or raw data files in batches?
> >
> > No.
>
> yes but there is a zip file unpacker (in BASE 2)
The zip unpacker is used
The zip up-loader is meant to be used for uploading bulks of files, and
is working well. For retrieving files from the server there is no batch
support.
Jari
Bob MacCallum wrote:
>
> Nicklas Nordborg writes:
> > Giovanni Coppola wrote:
> > > Hi everybody,
> > > I have two questions:
> >
Nicklas Nordborg writes:
> Giovanni Coppola wrote:
> > Hi everybody,
> > I have two questions:
> > 1) is there a way to download images or raw data files in batches?
>
> No.
yes but there is a zip file unpacker (in BASE 2)
I haven't used it, but doesn't this cut down on the GUI clicking
Giovanni Coppola wrote:
> Hi everybody,
> I have two questions:
> 1) is there a way to download images or raw data files in batches?
No.
> 2) while I was trying that (to download more than one file at once),
> in the 'Files and Directories' tree, I accidentally moved Offline
> some files, and
Hi everybody,
I have two questions:
1) is there a way to download images or raw data files in batches?
2) while I was trying that (to download more than one file at once),
in the 'Files and Directories' tree, I accidentally moved Offline
some files, and now I don't seem able to download them an
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