[Bioc-devel] avoiding call to ".find.package"

2013-03-04 Thread Andreas Heider
Dear mailing list, how can I solve the warning during the CHECK of the examples in my virtualArray package that states: Warning: ‘.find.package’ is deprecated. >From what function call does it originate? Thanks, Andreas [[alternative HTML version deleted]] _

Re: [Bioc-devel] avoiding call to ".find.package"

2013-03-04 Thread Antti Honkela
According to the build logs my package (tigre) appears to have the same problem, but I cannot reproduce this on my own install of R-devel (r62117). Perhaps this is just an R bug that has since been fixed? Antti On 04/03/13 10:52, Andreas Heider wrote: Dear mailing list, how can I solve the

Re: [Bioc-devel] avoiding call to ".find.package"

2013-03-04 Thread Laurent Gatto
On 4 March 2013 09:57, Antti Honkela wrote: > According to the build logs my package (tigre) appears to have the same > problem, but I cannot reproduce this on my own install of R-devel (r62117). > > Perhaps this is just an R bug that has since been fixed? I believe the warnings result from chang

Re: [Bioc-devel] I would like to publish a bioconductor package.

2013-03-04 Thread Davide Rambaldi
> You can solve the package size issue by putting your example data in a > separate "experiment data" package > (http://www.bioconductor.org/packages/release/data/experiment/). > > Stephanie I fixed the package size issue with a secondary experiment data package (flowFitExampleData) It is n

Re: [Bioc-devel] I would like to publish a bioconductor package.

2013-03-04 Thread Kasper Daniel Hansen
This is a kind of a chicken and egg problem. If the data in the experimental data package is in base R containers (like just a matrix etc), it is pretty clear: the data package does not depend on anything and the methods package either suggests or depends on the data package. However, in most cas

Re: [Bioc-devel] avoiding call to ".find.package"

2013-03-04 Thread Dan Tenenbaum
On Mon, Mar 4, 2013 at 2:22 AM, Laurent Gatto wrote: > On 4 March 2013 09:57, Antti Honkela wrote: >> According to the build logs my package (tigre) appears to have the same >> problem, but I cannot reproduce this on my own install of R-devel (r62117). >> >> Perhaps this is just an R bug that has

Re: [Bioc-devel] I would like to publish a bioconductor package.

2013-03-04 Thread Marc Carlson
Hi Davide, Lots of good advice here. The main goal with two packages is to minimize dependencies for the experiment data package as this is presumed to be the less specialized package. Whenever you have a package ready please be sure to follow the follow the instructions on the link that He