Hi Henrik,
FWIW there is some additional information here:
https://stat.ethz.ch/pipermail/bioc-devel/2014-January/005156.html
In particular the section starting at "One important difference with
the svn software repository" provides some useful hints on how to
commit changes to the data (see
- Original Message -
> From: "Vincent Carey"
> To: "Henrik Bengtsson"
> Cc: "bioC-devel"
> Sent: Thursday, October 23, 2014 7:45:13 PM
> Subject: Re: [Bioc-devel] Documentation on how to update a BioC experimental
> package?
>
> There is a README.txt in the pkgs folder.
>
> I will
There is a README.txt in the pkgs folder.
I will attach it. I think this is accurate, but there may be something
else on the site.
On Thu, Oct 23, 2014 at 10:23 PM, Henrik Bengtsson
wrote:
> It's been a while since I worked with experimental packages. Where
> can I find documentation on how
It's been a while since I worked with experimental packages. Where
can I find documentation on how to (Subversion) update our
AffymetrixDataTestFiles package with additional data files? All I
know is that the SVN repository only contains a stub of the package
and http://www.bioconductor.org/devel
Hi,
I just found a tiny bug in .guessSpeciesStyle(). Basically, if the
style name has a dot, this function incorrectly returns the name of
the style.
See below:
## Lets guess the species and style for 'T'
> GenomeInfoDb:::.guessSpeciesStyle('T')
$species
[1] "Populus trichocarpa"
$style
[1] "JG
Hi Robert,
Thanks for the bug report and reproducible example. Now fixed in release
1.12.2 and devel 1.13.4.
I've also updated the docs to better explain how the Seqinfo objects are
propagated / merged when supplied as 'genome'.
Valerie
On 10/23/2014 06:45 AM, Robert Castelo wrote:
hi th
Hi Mike,
On 10/22/2014 10:54 AM, Mike wrote:
Hi,
I am not able to find the cause of the following warning message
Warning: no function found corresponding to methods exports from ‘flowWorkspace’
for: ‘sampleNames<-’
First of all, replacement method 'sampleNames<-' does not seem to be
used
hi there,
in my package VariantFiltering i have an example VCF file from a Hapmap
CEU trio including three chromosomes only to illustrate its vignette.
i've come across a problem with the function readVcf() in
VariantAnnotation that may be specific of the situation of a VCF file
not having al
