Hi Valerie, hi Michael,
I find myself frequently moving back and forth between data.frames, GRanges
and VRanges objects.
The makeGRangesFromDataFrame function from the GenomicRanges makes the
coercion between the former straightforward, but I couldn't find anything
similar for the second step,
-- Forwarded message --
From: Karolis Uziela karolis.uzi...@scilifelab.se
Date: Feb 19, 2015 9:22 AM
Subject: readGAlignmentsFromBam function
To: Michael Lawrence lawrence.mich...@gene.com
Cc: bioconduc...@r-project.org bioconduc...@r-project.org
Hi,
I have looked at R check
Hi Dario,
This isn't the right forum for your question (this listserv is for
development of packages, not questions about existing packages), so you
should ask on the support site.
Best,
Jim
On Thu, Feb 19, 2015 at 1:00 AM, Dario Strbenac dstr7...@uni.sydney.edu.au
wrote:
library(GEOquery)
Hi Karolis,
Please use the bioc-devel mailing list (to which you should
be subscribed) to ask this type of question.
If you manually run the example in your package (using BioC devel,
which requires R-3.2), you'll get:
prebs_values - calc_prebs(bam_files, manufacturer_cdf_mapping)
