[CC'ing bioc-devel because this kind of thing often happens and the info below
is generally helpful in these cases.]
- Original Message -
> From: "Adam Mark"
> To: "Dan Tenenbaum"
> Sent: Monday, July 6, 2015 10:19:46 AM
> Subject: Fwd: mygene problems reported by the "Build/check repor
Hello,
I just encountered a bug in frmaTools that makes it impossible to use on
certain array platforms. The following lines in makeVectorsAffyBatch
fail on an AffyBatch object on the hthgu133pluspm platform:
pms <- pm(object)
pns <- probeNames(object)
pmi <- unlist(pmindex(object
I also discovered another apparent bug later in the same function. The
second to last line of makeVectorsAffyBatch is
vers <- ifelse(!is.null(cdfname),
as.character(packageVersion(cdfname)), "")
If cdfname is NULL, this line will throw an error because the second
argument to ifelse will
- Original Message -
> From: "Adam Mark"
> To: "Dan Tenenbaum"
> Sent: Monday, July 6, 2015 2:43:51 PM
> Subject: Re: mygene problems reported by the "Build/check report" for BioC 3.1
>
>
> Hi Dan,
>
>
> Thanks for your help. I was able to fix my issue. Also I am having
> trouble co
- Original Message -
> From: "Dan Tenenbaum"
> To: "Adam Mark"
> Cc: "bioc-devel"
> Sent: Monday, July 6, 2015 2:54:43 PM
> Subject: Re: [Bioc-devel] mygene problems reported by the "Build/check
> report" for BioC 3.1
>
>
>
> - Original Message -
> > From: "Adam Mark"
> >
