Re: [Bioc-devel] Lack of Genomic RleList

Thanks for the pointer, I'll experiment and update my materials. Kasper On Tue, Mar 29, 2016 at 2:43 PM, Hervé Pagès wrote: > Hi Dario, > > On 03/16/2016 04:00 AM, Dario Strbenac wrote: > >> Hello, >> >> I have a use case for which I notice other users have already asked

Re: [Bioc-devel] 49 software packages either have no vignettes or their vignettes are not built by R CMD build!

- Original Message - > From: "Karim Mezhoud" > To: "Dan Tenenbaum" > Cc: "bioc-devel" > Sent: Tuesday, March 29, 2016 12:05:03 PM > Subject: Re: [Bioc-devel] 49 software packages either have no vignettes or >

Re: [Bioc-devel] 49 software packages either have no vignettes or their vignettes are not built by R CMD build!

Thank you, I am in devel branch (git checkout devel) . when I "git svn rebase" I get all changed files with message: needs update. How can I update. km On Tue, Mar 29, 2016 at 4:16 PM, Dan Tenenbaum wrote: > > > - Original Message - > > From: "Karim Mezhoud"

Re: [Bioc-devel] Lack of Genomic RleList

Hi Dario, On 03/16/2016 04:00 AM, Dario Strbenac wrote: Hello, I have a use case for which I notice other users have already asked about https://stat.ethz.ch/pipermail/bioconductor/2013-December/056400.html and

Re: [Bioc-devel] package build failing in Windows with "Failed to locate the 'texi2pdf' output file"

Thanks Dan. Best, R. On Tue, 29-03-2016, at 17:03, Dan Tenenbaum wrote: > This error happens once in a while. It's very hard to reproduce because of > that (which is probably why I never received a reply when reporting the issue > on R-devel), but the 'solution' is

Re: [Bioc-devel] 49 software packages either have no vignettes or their vignettes are not built by R CMD build!

- Original Message - > From: "Karim Mezhoud" > To: "bioc-devel" > Cc: "Dan Tenenbaum" > Sent: Tuesday, March 29, 2016 6:11:15 AM > Subject: Re: [Bioc-devel] 49 software packages either have no vignettes or > their

Re: [Bioc-devel] package build failing in Windows with "Failed to locate the 'texi2pdf' output file"

Actually your problem is different and does not affect windows. Which branch have you committed your changes to? Can you do the following? git checkout release-3.2 git checkout -b issue/vignette-problem # fix the problem git commit -a git push # then copy and paste the command that git

Re: [Bioc-devel] 49 software packages either have no vignettes or their vignettes are not built by R CMD build!

Dear Dr Dan, Thank you for this note. In my case (canceR), I am using sweave and having: checking PDF version of manual ... [8s/19s] OK during R CMD Check. I need to sync devel version using git-mirrors ( https://www.bioconductor.org/developers/how-to/git-mirrors/). I am following scenario

[Bioc-devel] package build failing in Windows with "Failed to locate the 'texi2pdf' output file"

Dear All, I have a package, ADaCGH2, that I just noticed has failed to build in Windows in the latest report (https://www.bioconductor.org/checkResults/devel/bioc-LATEST/ADaCGH2/moscato2-buildsrc.html). The error is the dreaded Error in find_vignette_product(name, by = "texi2pdf", engine =