Dear Bioc team,
The isobar package doesn't build. Attached is a patch that fixes the
build errors and some namespace related warnings. There are still many
notes when checking, though.
Hope someone is happy to apply the patch.
Best wishes,
Laurent
Index: DESCRIPTION
==
Hi,
On Do, 2016-10-06 at 23:10 +0100, Laurent Gatto wrote:
...
> The failing checks should be fixed too now.
While this fix did not make it into todays build,
I can confirm that current muR in SVN has working
examples in the man pages, and does not exhibit
the check ERRORs.
Yours,
Steffen
-
On 7 October 2016 21:30, Rainer Johannes wrote:
> an update:
>
> I've switched back to the "default" initialize methods for Spectrum1
> and Spectrum2 objects in MSnbase (not implemented in C) and with these
> installing RMassBank seems to work.
> I have however now to run some intense torture te
an update:
I've switched back to the "default" initialize methods for Spectrum1 and
Spectrum2 objects in MSnbase (not implemented in C) and with these installing
RMassBank seems to work.
I have however now to run some intense torture tests on MSnbase to ensure that
we don't run again into the
Dear Emma,
The error is very strange indeed, and I hope Martin can help us out here.
With the latest RMassBank and MSnbase, I get
> new("RmbSpectrum2")
Error in initialize(value, ...) :
'initialize' method returned an object of class “Spectrum2” instead of
the required class “RmbSpectrum2”
Hi Philipp,
On 10/05/2016 12:09 AM, Angerer, Philipp wrote:
Although, since you (Philipp) are the maintainer of the nbconvertR
package, you may want to create an INSTALL file in that package.
It's up to you.
Dan
Haha, yeah. Thanks, Dan!
I’m already in the process of submittin
Hi Emma,
Yes, there is leeway for working on the package. Thank you for actively
trying to fix it! Unfortunately the notification emails stopped (broke)
at some point this dev cycle - we plan to reinstate them after the
release on the new build machines.
Thanks for your patience.
Valerie
On 10/
Hi BioC team,
In all the mzR troubles, it slipped through that RMassBank had a build error of
it's own presumably caused by an update to MSnbase - for some reason we never
received the email with the build error reports?!
We have discovered the error now, very late, and are onto finding out the
Hi,
I have currently a problem with my package 'pwOmics' not building on
tokay1 in devel version.
This is due to a vignette LaTex error I was not able to resolve so far
in my Rnw file:
LaTeX errors:
! Incomplete \iffalse; all text was ignored after line 82
The file ended while I was skipping
On Wed, Oct 5, 2016, at 06:31 PM, Martin Morgan wrote:
>
> If your package is added to the repository after the release, then it is
> added to the 'devel' branch and any changes are introduced there for
> availability at the next release.
>
> Any user can opt for the 'devel' branch
>
> Once a
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