[Bioc-devel] Subversion server "hedgehog" reboot Thursday 10/27 4:00 PM Seattle time

Developers, Our sys admins will reboot the Subversion server "hedgehog.fhcrc.org" today at 4:00 PM Seattle time (7:00 PM EST, 11:00 PM UTC). There will be a brief (we hope) interruption in Subversion at that time. This reboot is necessary because of a security update to the Linux kernel. H. --

Re: [Bioc-devel] incomplete vignette on macosx

Hi Hervé, >names(dev.cur()) should be "null device" in the context of vignette generation really ? this is intriguing because on the machine I tested it is "png" instead. perhaps this is the problem ? I'm going to try to set knitr device as png: opts_chunk$set(dev = 'png') on the devel build to

[Bioc-devel] Fwd: Question about a package submission

This was accidentally taken off list. I don't have easy access to a devel system at present so cannot investigate. I did not check over the sessionInfo Yes it produces the same error: > c(GRanges(), GRanges()) Error in .Primitive("c")(, ) : could not find symbol "recursive" in environment of th

Re: [Bioc-devel] Fwd: Question about a package submission

Since no one else took the bait, I'll try to answer... On 10/25/2016 06:57 PM, Ioannis Vardaxis wrote: Ioannis Vardaxis Stipendiat NTNU Sendt fra min iPhone Videresendt melding: Fra: "bioconductorseat...@gmail.com" mailto:bioconductorseat...@gmail.com>

Re: [Bioc-devel] Question about a package submission

On 10/27/2016 08:22 AM, Kevin RUE wrote: Hi Ioannis, Vincent, I'm in the middle of debugging a similar situation myself, which may provide a reproducible example at a package level. I am in the process of setting up AppVeyor CI for my package, and my R CMD check fails because of the same error.

Re: [Bioc-devel] Question about a package submission

Hi Ioannis, Vincent, I'm in the middle of debugging a similar situation myself, which may provide a reproducible example at a package level. I am in the process of setting up AppVeyor CI for my package, and my R CMD check fails because of the same error. https://ci.appveyor.com/project/kevinrue/t

Re: [Bioc-devel] Question about a package submission

Please send a reproducible example with value of sessionInfo() at time of error. On Thu, Oct 27, 2016 at 7:06 AM, Ioannis Vardaxis < ioannis.varda...@math.ntnu.no> wrote: > Hi, > > I am using the R-devel version for writing an R package. I tried to use > the c(Granges,Granges) command to merge tw

Re: [Bioc-devel] Question about a package submission

Hi, I am using the R-devel version for writing an R package. I tried to use the c(Granges,Granges) command to merge two Granges objects and I get the following error: Error in .Primitive("c")(, ) : could not find symbol "recursive" in environment of the generic function I also get the same e