Re: [Bioc-devel] lumi package is not available

2016-11-09 Thread Martin Morgan
I updated the code to remove the R CMD check error (svn revision r123826) and to clean up miscellaneous NOTEs about formatting (r123827). I ported these changes to release. It is likely that the package has a number of other similar problems (assigning exprs() with incompatible dimnames) so

Re: [Bioc-devel] lumi package is not available

2016-11-09 Thread James W. MacDonald
On Wed, Nov 9, 2016 at 4:48 PM, Martin Morgan wrote: > I updated the code to remove the R CMD check error (svn revision r123826) > and to clean up miscellaneous NOTEs about formatting (r123827). I ported > these changes to release. > > It is likely that the package has a number of other similar p

Re: [Bioc-devel] lumi package is not available

2016-11-09 Thread Martin Morgan
On 11/09/2016 05:25 PM, James W. MacDonald wrote: On Wed, Nov 9, 2016 at 4:48 PM, Martin Morgan mailto:martin.mor...@roswellpark.org>> wrote: I updated the code to remove the R CMD check error (svn revision r123826) and to clean up miscellaneous NOTEs about formatting (r123827). I

Re: [Bioc-devel] A handful of check to follow up on R CMD BiocCheck

2016-11-09 Thread Martin Morgan
On 11/03/2016 08:14 AM, Kevin RUE wrote: Apologies for the additional spam, for two reasons: * The diff files that I've previously sent had the base and modified versions swapped. This new one fixes that. * This new diff file (always relative to the code I cloned from Bioconductor-mi

Re: [Bioc-devel] lumi package is not available

2016-11-09 Thread James W. MacDonald
>> Pan Du has several packages. Is this an issue for all of those packages >> or just lumi? >> > > I think that's a reasonable conclusion. Martin > I am not sure I follow. What is the reasonable conclusion? That it's just this one package, or all of them? Jim -- James W. MacDonald, M.S. Biosta