Re: [Bioc-devel] "Error: duplicate commits" when pushing FamAgg to Bioconductor git

Thanks Nitesh for your quick reply! > On 13 Feb 2018, at 16:47, Turaga, Nitesh > wrote: > > Hi, > > It seems that there are multiple levels of duplication on your repository. > > You seem to have issued the “merge” with not the current bioconductor devel >

Re: [Bioc-devel] rsvg on mac

Hi Kevin, As Val said, some CRAN packages with native code won't compile on our Windows or Mac builders because of missing components, and rsvg is one of them. Please keep in mind that we already install many external components required for the compilation of Bioconductor packages. The process

Re: [Bioc-devel] rsvg on mac

Valerie, Ok, I understand the difference now. Would it be possible to install the system requirement for rsvg ( just on devel)? I'm trying to generate plots in either PNG or SVG with OpenBabel. For PNG, OpenBabel requires it's own Cario library be installed on the system (doesn't

Re: [Bioc-devel] Access to push to pacakges Polyester and Ballgown

Thanks Jack. I've added you to both packages. Before you have access, you'll need to fill out this form https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform Please use your github username on the form - we'll get your ssh keys from that

Re: [Bioc-devel] Access to push to pacakges Polyester and Ballgown

Yes we are adding him to both On Tue, Feb 13, 2018, 10:53 AM Jack Fu wrote: > Thanks for checking Valerie. My github id is jmf47. > > Thanks! > Jack > > On Feb 13, 2018, at 10:22 AM, Obenchain, Valerie < > valerie.obench...@roswellpark.org> wrote: > > Hi, > > Jack, It doesn't

Re: [Bioc-devel] "Error: duplicate commits" when pushing FamAgg to Bioconductor git

Hi, It seems that there are multiple levels of duplication on your repository. You seem to have issued the “merge” with not the current bioconductor devel but the (now deprecated) GitHub- bioconductor mirror, multiple times. Please correct me if this is not accurate. I’m wondering why the

Re: [Bioc-devel] Access to push to pacakges Polyester and Ballgown

Thanks for checking Valerie. My github id is jmf47. Thanks! Jack On Feb 13, 2018, at 10:22 AM, Obenchain, Valerie > wrote: Hi, Jack, It doesn't look like you currently have access to other Bioconductor packages - is

Re: [Bioc-devel] Access to push to pacakges Polyester and Ballgown

Hi, Jack, It doesn't look like you currently have access to other Bioconductor packages - is that correct? If you don't currently have access, I need to know your github username. Jeff, are we adding Jack to both polyester and ballgown? Valerie On 02/13/2018 02:57 AM, Jeff Leek wrote: HI

Re: [Bioc-devel] rsvg on mac

Hi, By default, the build system installs CRAN dependencies on the Mac and Windows builders with 'type=both': install.packages("mypackage", type="both") This means it first tries to install the binary and if that fails, it tries to install from source. Packages without native code or

Re: [Bioc-devel] Access to push to pacakges Polyester and Ballgown

HI Bioc Team If you could please add Jack that would be great! Jeff On Mon, Feb 12, 2018 at 7:53 AM Jack Fu wrote: > Hi Bioc team, > > I'm currently maintaining the packages Ballgown and polyester. However, > I haven't been able to access the new system since the change in