Hi Kevin,
My hunch is that the image that you're working with is old. If you're
working with an
older image, you could run into that problem with different R versions
used to install 'backports'.
I would first ensure that I'm working with a clean image by stopping any
active containers, removing
I have now implemented VCF tracks for IGV, supporting both
a local VCF object read and filtered by the VariantAnnotation package, and
a remote webserver-hosted vcf file.
In normal use I expect (and recommend) that the local VCF object will be
relatively small (< 1Mb, < 50 samples - or
On 20 March 2018 19:30, Turaga, Nitesh wrote:
> Hi Laurent,
>
> You cannot force push. Is you GitHub repo at a position where it needs
> to be synced to the Bioconductor repo?
>
> If so, I can force push for you and sync.
I was able to push from a cloned bioc repo, but can't to
remotes/upstream.
Hi Marcel,
Thanks for the reply. I tried your `wercker.yml` file (exactly as is), and
still got the same issue:
* creating vignettes ... ERROR
Error: processing vignette 'MyPackage-vignette.Rmd' failed with diagnostics:
package ‘backports’ was installed by an R version with different internals;
i
Hi Laurent,
You cannot force push. Is you GitHub repo at a position where it needs to be
synced to the Bioconductor repo?
If so, I can force push for you and sync.
Best,
Nitesh
> On Mar 20, 2018, at 10:36 AM, Laurent Gatto wrote:
>
>
> On 20 March 2018 01:58, Turaga, Nitesh wrote:
>
>> H
Hi Kevin,
Being that I am unable to fully reproduce the issue, I can only say that
I have been successful in running the steps in the Wercker build for a
different package.
Please do a *clean* pull of the Bioconductor image from docker hub by
removing any stale images
first.
Here is the wercker.
On 20 March 2018 01:58, Turaga, Nitesh wrote:
> Hi Laurent,
>
> Are you sure you are using either of the private keys associated with
> these public keys? You have to make sure to use the correct private
> key.
Yes, I checked, and the keys are correct. Here's what I get in a cleanly
cloned and f
