Hi
I am the developer of the packages DAPAR and Prostar. I have to plan in
advance some work and I would like to synchronise this with the next
release of Bioconductor.
I know it is a bit early but do you know the date of the next release ?
Will it be the 31th of Octobre as last year ?
Thank
Thanks Pariksheet and Martin! It seems that in fact both of these
approaches work, e.g. (I made a simpler test case to figure this out):
devtools::install_github("lwaldron/nothing", repos =
BiocManager::repositories(), dependencies = TRUE)
remove.packages(c("nothing", "ABCp2"))
BiocManager::instal
I'm not able to confirm this, but since BiocManager::install() uses
remotes::install_github() when it sees a pattern "foo/bar", I think
BiocManager::install("foo/bar", dependencies = TRUE) will behave as
desired.
For local installs, I think we end up at utils::install.packages(),
where the do
On 07/09/2018 11:00 AM, Sergio Picart Armada wrote:
Thank you Morgan,
I already fixed this by skipping the offending test on win32.
I fixed the devel version, but the release version has not noticed the
version bump (from 1.0.0 to 1.0.1).
Did I forget anything?
builds are nightly, not on
Hi Levi,
Why not use devtools which already does this? Setting `dependencies =
TRUE` installs the packages listed in Imports and Suggests, and
BiocManager::repositories() like BiocInstaller::biocinstallRepos() returns
a list of repositories. See inline below:
On Mon, Jul 9, 2018 at 4:51 AM, Lev
Thank you Morgan,
I already fixed this by skipping the offending test on win32.
I fixed the devel version, but the release version has not noticed the version
bump (from 1.0.0 to 1.0.1).
Did I forget anything?
Thank you again,
On Monday, May 21, 2018 18:58 CEST, Hervé Pagès wrote:
On 05
It would be useful to be able to use BiocManager to install
the Depends/Imports/Suggests of a source package not on Bioconductor, e.g.:
BiocManager::install("Bioconductor/BiocWorkshops") #works but only if all
Depends/Imports are already installed
or:
BiocManager::install_deps("Bioconductor/Bio
