Hey Herv�,
Thank you for very much for your input, I have updated the vignette builder as
suggested.
To note, the original issue I was having was solved with the help of Spencer
Nystrom.
Kind regards,
Alan.
From: Herv� Pag�s
Sent: Thursday 22 April 2021 18:2
Hi all,
I have submitted our package ‘scanMiR’ yesterday, which is now in the 'review
in progress’ phase (https://github.com/Bioconductor/Contributions/issues/2067).
When trying to push changes upstream, I get the error:
> $ git push upstream master
> Enter passphrase for key '/home/fgross/.ssh
Dear all,
My package has just been accepted but an error occured during the nigthly devel
build
Here the report :
https://master.bioconductor.org/checkResults/3.13/bioc-LATEST/conclus/
It seems to be a SSL certificate problem relative to biomaRt package and
connection timed out to ensembl serv
Dear Bioconductor,
Please let Nilotpal Sanyal be the new maintainer of the CGEN package.
Sincerely,
Bill
From: Nilotpal Sanyal
Sent: Thursday, April 22, 2021 7:24 PM
To: maintai...@bioconductor.org; bioc-devel@r-project.org
Cc: Wheeler, Bill (IMS) ; Summer S Han
; nilan...@jhu.edu
Subject: CG
Another problem is you SSH key available on your github accout is compromised.
It�s available on another account already. (This usually happens when you share
the same key around and it gets added to user accounts who that want to
maintain the same package).
Please create a new SSH key and add
Hi,
You do not have write privileges to the package because only the maintainer
(cre) is given write access.
The submission is a little messy here, because
1. It�s submitted from a lab account (this is ok in general)
2. You are not listed as maintainer, but want to maintain the package.
Hi AJ,
This issue has been resolved. You should be able to push versions from 1.23.2
and onwards.
Going forward, please make sure to check your version numbers for both release
and devel.
Check if your files have git merge conflicts.
Most importantly, if you have questions please ask either
Hi,
I�ve created a new account for Nilotpal in the BiocCredentials platform.
Nilotpal would have to activate the account first, and then add SSH keys to
gain access to the package.
Once access is gained, please change the maintainer field in the DESCRIPTION
file of the package.
Best,
Nitesh
Hi,
Please check http://bioconductor.org/developers/how-to/git/
From: Nilotpal Sanyal
Date: Friday, April 23, 2021 at 12:04 PM
To: Nitesh Turaga , Wheeler, Bill (IMS)
, maintai...@bioconductor.org
, bioc-devel@r-project.org
Cc: Summer S Han , nilan...@jhu.edu
Subject: Re: CGEN package mai
Dear Ilyess,
The Ensembl BioMart server seems to have been intermittent over the last
few days. It looks like both conclus and biomaRt are now building
successfully - hopefully it stays that way.
These issues happen occasionally with packages that access internet
resources, and it's normally wort
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