[Bioc-devel] orthogene: killed while reading tree

Hi everyone, After some pushes upstream to my package orthogene, I noticed that the release version (3.16) is failing on the server because it was �Killed� midway through. But I can�t see any details that explain why or how it

Re: [Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

Dear Lori and Sarvesh, The proxy server at our institute was blocking ssh. Sorry for bothering you with that, it's working now : ) Thankyou very much for the help! Aditya It looks like it reads /etc/ssh/ssh_config but doesn't actually try a ssh key. Perhaps try regenerating a ssh key and a

Re: [Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

It looks like it reads /etc/ssh/ssh_config but doesn't actually try a ssh key. Perhaps try regenerating a ssh key and adding new or check the setting in the ssh_config that it is refrencing. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of B

Re: [Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

Thank you very much Lori, $ git remote -v origin https://github.com/bhagwataditya/autonomics.git (fetch) origin https://github.com/bhagwataditya/autonomics.git (push) upstreamg...@git.bioconductor.org:packages/autonomics.git (fetch) upstreamg...@git.bioconductor.org:packages/aut

Re: [Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

It would help to show some of the commands and output in the FAQ for git help and working through some of the trouleshooting there. http://contributions.bioconductor.org/git-version-control.html#faq Particularly showing your git remote -v and trying ssh -T -v g...@git.bioconductor.org L

Re: [Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

Thank you very much Sarvesh, lovely also to hear from you - how are you? . I had indeed failed to do these branch renamings which I now have. Unfortunately, my ssh issue remains: git push upstream devel ssh: connect to host git.bioconductor.org port 22: Connection timed out fatal: Could not read

Re: [Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

Hi Aditya, Can you check if this is due to the recent branch name changes: default branch name changed from 'main' to 'devel' This was announced on the mailing-list, and also on this blogpost: https://bioconductor.github.io/biocblog/posts/2023-03-01-transition-to-devel/ Sarvesh On Tue, 4 Apr 202