[Bioc-devel] Is the ExpressionSet Class Deprecated?

2020-08-31 Thread Augustin Luna
, Augustin Luna ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

[Bioc-devel] JAVA_HOME cannot be determined on Windows on Bioconductor platform report

2021-10-18 Thread Augustin Luna
e and I am unsure how to debug or fix it. Can anyone suggest how to proceed? Thanks, Augustin Luna ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

Re: [Bioc-devel] JAVA_HOME cannot be determined on Windows on Bioconductor platform report

2021-10-22 Thread Augustin Luna
oved the "which java" call. Thanks, Augustin Luna On Mon, Oct 18, 2021 at 3:14 PM Hervé Pagès wrote: > > Hi Augustin, > > Please don't rely on JAVA_HOME to detect Java. The JDK installer on > Windows doesn't set this variable so you shouldn't expect it to be set

[Bioc-devel] Changing Maintainer Email Addresses

2023-05-01 Thread Augustin Luna
represent me: https://orcid.org/-0001-5709-371X Now I do not have access to https://git.bioconductor.org/BiocCredentials How can I change the email to a current working institute address? Thank you, Augustin Luna ___ Bioc-devel@r-project.org mailing list

[Bioc-devel] Password Reset Help

2018-08-07 Thread Augustin Luna
I requested a password reset from this site: https://git.bioconductor.org/BiocCredentials/login/?next=/BiocCredentials/ a couple of times and I haven't received it. Not sure what to do. Thanks, Augustin Luna ___ Bioc-devel@r-project.org mailing

Re: [Bioc-devel] [bcbmail] Re: EXTERNAL: Password Reset Help

2018-08-09 Thread Augustin Luna
I do have access to the email, but I can no longer send emails from the mskcc.org account. I just activated my account; I thought it was the account from the SVN. I need to spend some time trying to figure out if I can commit. Thanks, Augustin Luna On Wed, Aug 8, 2018 at 8:57 AM, Obenchain

[Bioc-devel] paxtoolsr Bioconductor Push Issues

2018-09-20 Thread Augustin Luna
I've made needed changes to paxtoolsr for the next release. I cannot push to Bioconductor; see below. paxtoolsr is essentially a wrapper around the jar with helper functions; the jar has been there since the beginning. Please advise. Augustin Luna Writing objects: 100% (1252/1252), 22.3

Re: [Bioc-devel] paxtoolsr Bioconductor Push Issues

2018-09-21 Thread Augustin Luna
As far as Git is concerned yes a change was made, but it was probably a move or a rename. So how do we move forward? paxtoolsr has been greater than 5MB for all of its history (4-5 years) on Bioconductor; the package cannot exist without that jar. Thanks, Augustin Luna On Thu, Sep 20, 2018 at 4

Re: [Bioc-devel] paxtoolsr Bioconductor Push Issues

2018-09-24 Thread Augustin Luna
I just pushed. I guess we'll soon see if my updates fix some problems have been happening with the package. Augustin Luna On Mon, Sep 24, 2018 at 11:24 AM, Turaga, Nitesh wrote: > Hi Augustin, > > You should be able to push to your repository now. > > Please notify me once y

Re: [Bioc-devel] paxtoolsr Bioconductor Push Issues

2018-09-29 Thread Augustin Luna
he current release version. What is the guidance? Commit this large batch of changes to fix release or leave it in a broken state? I assume the next BioC release is soon. Augustin Luna On Mon, Sep 24, 2018 at 2:14 PM Turaga, Nitesh wrote: > > Hi Augustin, > > Please remove the .Rproj f