solved the problem ,
causing error in devel and RELEASE_3_13. Anyway, in the next weeks I will
monitor the situation.
Thanks again.
Mattia
Da: Nitesh Turaga
Inviato: giovedì 29 luglio 2021 15:38
A: Mattia Chiesa
Cc: bioc-devel@r-project.org ;
marcel.ra...@rosw
nfoMonzino/DaMiRseq.git (push)
upstreamg...@git.bioconductor.org:packages/DaMiRseq.git (fetch)
upstreamg...@git.bioconductor.org:packages/DaMiRseq.git (push)
Thanks in advance,
Mattia
________
Da: Mattia Chiesa
Inviato: mercoledì 28 luglio 2021 10:09
A: b
-project.org
Oggetto: Re: [Bioc-devel] EXTERNAL: R: Bioconductor package DaMiRseq
Hi Mattia,
Make sure you are pushing to git.bioconductor.org in addition to GitHub.
I still see
Maintainer: Mattia Chiesa
in the git.bioconductor.org repo:
https://code.bioconductor.org/browse/DaMiRseq/blob/master
x27;ve got again the error.
Da: Nitesh Turaga
Inviato: martedì 27 luglio 2021 16:10
A: Mattia Chiesa
Cc: bioc-devel
Oggetto: Re: [Bioc-devel] Bioconductor package DaMiRseq
Please add your SSH keys and you’ll gain access to your package.
Once you get access,
: martedì 27 luglio 2021 15:38
A: Mattia Chiesa
Cc: bioc-devel@r-project.org
Oggetto: Re: [Bioc-devel] Bioconductor package DaMiRseq
Hi
Are you using mattia.chi...@cardiologicomonzino.it to activate your
BiocCredentials account?
It seems this email is not the same as the one on the maintainer
cannot activate the Bioconductor Git Credentials, even though I
mantain the package since 2017.
Thanks in advance,
Mattia
Da: Kern, Lori
Inviato: marted� 27 luglio 2021 14:29
A: Mattia Chiesa
Oggetto: Re: Bioconductor package DaMiRseq
Regardless of whether it stems
Dear All,
I am the mantainer of the DaMiRseq package. I got these Warnings in the
Bioconductor Build/Check system but not locally:
** running examples for arch 'i386' ... WARNING
Found the following significant warnings:
Warning: working directory was changed to
'C:/Users/biocbuild/bbs-3.7-bi
Dear all,
I am the maintainer of the DaMiRseq package. For several days, my package is in
ERROR status, only for merida2 (OS X 10.11.6 El Capitan / x86_64) in the devel
release. I tried to trace the error back and I found out that the problem was
due to the RWeka/Rwekajars packages.
I contacted
___
Da: Turaga, Nitesh
Inviato: marted� 12 dicembre 2017 16:35
A: Mattia Chiesa
Cc: bioc-devel@r-project.org
Oggetto: Re: [Bioc-devel] DaMiRseq: error while pushing
Hi Mattia,
If you read the �error� and �hint� messages carefully, it says do a
> hint: (e.g., 'git pull ...') before
Dear All,
I am the mantainer of the DaMiRseq package.
I performed some relevant modificantions in the package (i.e. added functions,
added the CITATION file, updated vignette and NEWS file) and now I'm ready to
push (from a local folder to github and Bioconductor).
So, as usually, I typed:
git ad
E 3_6), forcing the usage of 'plsVarSel version = 0.9.1'.
Mattia
Da: Martin Morgan
Inviato: lunedì 20 novembre 2017 15:48
A: Shepherd, Lori; Mattia Chiesa; bioc-devel@r-project.org
Oggetto: Re: [Bioc-devel] DaMiRseq in ERROR in the stable release
On 11/20/2017 08:
Dear Bioc team,
I�m the mantainer of the DaMiRseq package. About a week ago, the BUILD ended up
in ERROR in the stable release (3.6).
The error occurs in each platform during the creation of the vignette.
Here the Build/Check report:
http://bioconductor.org/checkResults/release/bioc-LATEST/DaMiRse
Da: Bioc-devel per conto di Mattia Chiesa
Inviato: sabato 23 settembre 2017 21:22
A: Martin Morgan; Turaga, Nitesh
Cc: bioc-devel@r-project.org
Oggetto: [Bioc-devel] R: R: Errors updating DaMiRseq package
Thank you Martin for your reply. You are right: some files were not OK. Now
“
lpark.org>
Inviato: sabato 23 settembre 2017 14:47
A: Mattia Chiesa<mailto:mattia.chi...@hotmail.it>; Turaga,
Nitesh<mailto:nitesh.tur...@roswellpark.org>
Cc: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>
Oggetto: Re: [Bioc-devel] R: Errors updating DaMiRseq package
commit -m "Fixed conflicts in version change"
However, I didn�t delete any lines in DESCRIPTION. (between = and >>>>>>).
Do you think it would be OK?
Thanks again,
Mattia
Da: Turaga, Nitesh<mailto:nitesh.tur...@roswellpark.org>
Inviato: venerd� 22 set
Dear all,
I am the mantainer of the DaMiRseq package. I have some problems with GIT:
I filled the form for ssh key some weeks ago and I guess everthinks is ok.
$ git remote -v
origin https://github.com/BioinfoMonzino/DaMiRseq.git (fetch)
origin https://github.com/BioinfoMonzino/DaMiRseq.git (pus
No methods found in "GenomicAlignments" for requests: pmapFromTranscripts
I got 'ERROR' only in veracruz2 while the status in malbec2, tokay2 and toluka2
is 'OK'.
Here the details:
http://bioconductor.org/checkResults/devel/bioc-LATEST/DaMiRseq/
How to handle
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