Our package CatsCradle was accepted several days ago and we were told it would
now be in the nightly build. Accordingly, we were expecting to see it appear
on Bioconductor. The message advised to check that github has my ssh key,
which it does. While I have been handling the submission, the
Greetings -
Now that the problem with BiocCheck() has been fixed and the package is
building without errors, I'm wondering what are the next steps.
Many thanks,
Michael
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We are currently working through the submission of a new package, CatsCradle
(issue #3452). We get a build error from the Coding Practices section of the
BiocCheck tests, namely
Error in seq.default(which(cond) - length(notLookback), which(cond)) :
'from' must be of length 1
For whatever re
My package deltaCaptureC is suddenly having build problems, specifically a
problem building the vignette. It fails when attempting to display a ggplot
object in the vignette, and this seems to be due to changes in ggplot. I've
updated the .rda files for the plots and the vignette now builds pr
I recently got a build error message regarding the package deltaCaptureC which
had been stable and error-free for several years. I was able to fix the
problem and move the resulting fix to devel. The development version now shows
a successful build. However, this has not propagated to the r
I am trying to push changes to the citation in my package deltaCaptureC
Previously when I ran
git remote -v
I was able to see both the origin and the upstream. I now only see origin.
Likewise, running
git fetch upstream
fails with
fatal: 'upstream' does not appear to be a git reposi
I am trying to update the citation in my package deltaCaptureC but have not had
any success. I am following the instructions at
https://bioconductor.org/developers/how-to/git/push-to-github-bioc/
My local copy of the package has version 1.7.1
git remote -v
gives me
origin https://github
Apologies for a previous email that seems content free.
I've run into a cosmic mis-match between biomaRt and TxDb which is either a bug
or a bug waiting to happen. In brief, biomaRt reports entrezgene_id as a
numeric, but TxDb wants it as a character. What's deadly in this is that TxDb
does
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Is the failure in your code or in the vignettes? I ran into a situation
where I was @importFrom-ing function and my devtools::check() was
failing because the @examples code wasn't seeing the imported
functions. This actually makes sense as a behavior because examples
should act like the us
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