Re: [Bioc-devel] Error in building vignette for previously stable version

2019-12-05 Thread Mike Smith
Hi Jakob, This looks like the same problem a few others have reported. The latest advice was to wait for BiocStyle to be updated to reflect changes in rmarkdown, so you don't need to do anything for now: https://stat.ethz.ch/pipermail/bioc-devel/2019-December/015870.html Mike On Thu, 5 Dec 201

[Bioc-devel] Error in building vignette for previously stable version

2019-12-04 Thread Jakob Willforss
Hi all, I am the developer of NormalyzerDE. A few days ago the release version of NormalyzerDE started getting errors in the vignette building (with no updates from my side). I saw in the mailing list that others also had encountered issues in the vignette. I don't know how widespread the issu

Re: [Bioc-devel] Error in building vignette

2017-10-19 Thread Martin Morgan
On 10/19/2017 06:21 AM, Moritz Gerstung wrote: Hi all It looks like a number of packages have failed the latest Windows build due to Vignette/MikTeX issues. 'a number' is pretty good -- there were almost 1000 failures in Wednesday's build report! Back closer to normal now... Martin The

Re: [Bioc-devel] Error in building vignette

2017-10-19 Thread Moritz Gerstung
Hi all It looks like a number of packages have failed the latest Windows build due to Vignette/MikTeX issues. The common denominator appears to be > Warning: running command > '"C:\PROGRA˜1\MIKTEX˜1.9\miktex\bin\x64\texify.exe" .. had status 1 > Error in find_vignette_product(name, by = "tex

[Bioc-devel] Error in building vignette

2017-10-19 Thread sergi . picart
Dear developers,  I have stumbled upon issues with our package vignette. In the windows build: * creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.6-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status