Re: [Bioc-devel] DMRcaller build error

2018-04-27 Thread Radu Zabet
Thanks for the feedback! I've just done that! Radu On Fri, Apr 27, 2018 at 8:40 PM, Hervé Pagès wrote: > On 04/27/2018 12:31 PM, Radu Zabet wrote: > >> Thank you for that Herve! >> >> I managed to figure out what the problem was. >> >> I was using a GRangesList constructor and, when validatin

Re: [Bioc-devel] DMRcaller build error

2018-04-27 Thread Hervé Pagès
On 04/27/2018 12:31 PM, Radu Zabet wrote: Thank you for that Herve! I managed to figure out what the problem was. I was using a GRangesList constructor and,  when validating the argument passed to the function, I was checking if the class was GRangesList instead of CompressedGRangesList. Co

Re: [Bioc-devel] DMRcaller build error

2018-04-27 Thread Radu Zabet
Thank you for that Herve! I managed to figure out what the problem was. I was using a GRangesList constructor and, when validating the argument passed to the function, I was checking if the class was GRangesList instead of CompressedGRangesList. Radu On Fri, Apr 27, 2018 at 8:11 PM, Hervé Pagè

Re: [Bioc-devel] DMRcaller build error

2018-04-27 Thread Hervé Pagès
Hi Radu, DMRcaller is all green on today's report: https://bioconductor.org/checkResults/3.7/bioc-LATEST/DMRcaller/ Remember that after you update (and push to git.bioconductor.org) you need to wait at least 18h before the update is visible on the build report. 18h is if you pushed right befo

[Bioc-devel] DMRcaller build error

2018-04-20 Thread Radu Zabet
Hi everyone, I am the maintainer of DMRcaller. I did an update yesterday and on the build report today, the package failed with the error. Error: processing vignette 'DMRcaller.Rnw' failed with diagnostics: methylationProfile needs to be a GRangesList Execution halted On my machine (MacOS with