Re: [Bioc-devel] EXTERNAL: Question about Wercker continuous integration

2018-03-21 Thread Kevin RUE
Thanks Marcel, it works! After clearing the cache (Wercker > Project > Options > Cache > "Clear cache" button), R CMD check now works perfectly on Wercker. Indeed, I think I initially used an older box, and didn't realise that the cached box was being fetched instead of downloading the more recent

Re: [Bioc-devel] EXTERNAL: Question about Wercker continuous integration

2018-03-20 Thread Marcel Ramos
Hi Kevin, My hunch is that the image that you're working with is old. If you're working with an older image, you could run into that problem with different R versions used to install 'backports'. I would first ensure that I'm working with a clean image by stopping any active containers, removing

Re: [Bioc-devel] EXTERNAL: Question about Wercker continuous integration

2018-03-20 Thread Kevin RUE
Hi Marcel, Thanks for the reply. I tried your `wercker.yml` file (exactly as is), and still got the same issue: * creating vignettes ... ERROR Error: processing vignette 'MyPackage-vignette.Rmd' failed with diagnostics: package ‘backports’ was installed by an R version with different internals; i

Re: [Bioc-devel] EXTERNAL: Question about Wercker continuous integration

2018-03-20 Thread Marcel Ramos
Hi Kevin, Being that I am unable to fully reproduce the issue, I can only say that I have been successful in running the steps in the Wercker build for a different package. Please do a *clean* pull of the Bioconductor image from docker hub by removing any stale images first. Here is the wercker.