,
>> "component_term", "evidence", "evidence_type", "confidence_code",
>> "entrez_id")
>> names(cls) <- columns(x)
>> cls
>> }
>>
>>
>> columns
>>
>> nonstandardGenericFu
; }
>
>
> selectMethod("columns", "PANTHER.db")
>
> Method Definition:
>
> function (x)
> {
> c("FAMILY_ID", "GOSLIM_ID", "GOSLIM_TERM", "UNIPROT", "SPECIES",
> "FAMILY_TERM",
Hi all,
I'm running the latest Bioc + PANTHER.db
I think we've got the GOSLIM_TERM where the GOSLIM_ID should be:
In the vignette, we have this:
R> go_ids <- head(keys(PANTHER.db,keytype="GOSLIM_ID"))
R> go_ids
## [1] "GO:003" "GO:165" "GO:166" "GO:228"
"GO:375"
D", "GOSLIM_ID", "GOSLIM_TERM", "UNIPROT", "SPECIES",
"FAMILY_TERM", "SUBFAMILY_TERM", "CLASS_ID", "CLASS_TERM",
"PATHWAY_ID", "PATHWAY_TERM", "COMPONENT_ID", "CO
gt;> selectMethod("columns", "PANTHER.db")
> Method Definition:
>
> function (x)
> {
> c("FAMILY_ID", "GOSLIM_ID", "GOSLIM_TERM", "UNIPROT", "SPECIES",
> "FAMILY_TERM", "SUBFAMILY_T
