Re: [Bioc-devel] Something about time out errors

2017-09-29 Thread Hervé Pagès
;bioc-devel-boun...@r-project.org> on behalf of Aimin Yan <aimin.at.w...@gmail.com> Sent: Wednesday, September 27, 2017 12:49:13 PM To: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Something about time out errors I am submitting a R package to bioconductor. but I got the followin

Re: [Bioc-devel] Something about time out errors

2017-09-29 Thread Shepherd, Lori
ioc-devel] Something about time out errors I am submitting a R package to bioconductor. but I got the following warning and errors when I performed R CMD check. When I perform R CMD check on my local machines, it works. Is there a possible way that I can set up DISPLAY environment variable? He

Re: [Bioc-devel] Something about time out errors

2017-09-27 Thread Aimin Yan
I am submitting a R package to bioconductor. but I got the following warning and errors when I performed R CMD check. When I perform R CMD check on my local machines, it works. Is there a possible way that I can set up DISPLAY environment variable? Here is the link

Re: [Bioc-devel] Something about time out errors

2017-03-27 Thread Dan Tenenbaum
rg> > Sent: Monday, March 27, 2017 12:29:49 PM > Subject: Re: [Bioc-devel] Something about time out errors > On 03/27/2017 12:57 PM, Rainer Johannes wrote: >> Do you have code fetching data from web resources? I also sometimes get >> timeout >> errors on ensembldb and I

Re: [Bioc-devel] Something about time out errors

2017-03-27 Thread Martin Morgan
On 03/27/2017 12:57 PM, Rainer Johannes wrote: Do you have code fetching data from web resources? I also sometimes get timeout errors on ensembldb and I guess it's because in some unit tests I'm fetching data from the ensembl ftp server. Testing web resources is a pretty interesting topic.

Re: [Bioc-devel] Something about time out errors

2017-03-27 Thread Rainer Johannes
Do you have code fetching data from web resources? I also sometimes get timeout errors on ensembldb and I guess it's because in some unit tests I'm fetching data from the ensembl ftp server. jo > On 27 Mar 2017, at 18:37, Martin Morgan wrote: > > On 03/27/2017

Re: [Bioc-devel] Something about time out errors

2017-03-27 Thread Martin Morgan
On 03/27/2017 12:22 PM, Aimin Yan wrote: I am submitting a R package to bioconductor. but I got time out errors when I performed R CMD check. Is there a possible way that I can set up time to allow more time for R CMD check? Or I have to use examples that they do not cost large time.

[Bioc-devel] Something about time out errors

2017-03-27 Thread Aimin Yan
I am submitting a R package to bioconductor. but I got time out errors when I performed R CMD check. Is there a possible way that I can set up time to allow more time for R CMD check? Or I have to use examples that they do not cost large time. Thank you for your help Aimin