Hi,
I am experiencing troubles installing "Hmisc", especially its dependency
"acepack", via
> biocLite("acepack")
in R-devel installed from the "R-devel-mavericks-signed.pkg" downloaded
from https://r.research.att.com/.
The error reads:
BioC_mirror: https://bioconductor.org
Using Bioconductor
ioc-devel-boun...@r-project.org] on behalf of Ludwig
Geistlinger [ludwig.geistlin...@bio.ifi.lmu.de]
Sent: Wednesday, November 18, 2015 5:53 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Troubles using R/Bioc-devel with Mac OS X El Capitan
10.11.1
Hi,
I am experiencing troubles i
-5.2 via editing the R_HOME/etc/Makeconf or
> ~/.R/Makevars.
>
> Martin
>
>
>
> From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Ludwig
> Geistlinger [ludwig.geistlin...@bio.ifi.lmu.de]
> Sent: Wednesday, N
/cran.r-project.org/doc/manuals/r-release/R-admin.html#OS-X
>>
>> From the discussion (especially the posts by Brian Ripley) it seems like
>> it should be possible to use gfortran-5.2 via editing the
>> R_HOME/etc/Makeconf or ~/.R/Makevars.
>>
>> Martin
>>
>>
F77="gfortran -arch x86_64" \
>> FC="gfortran -arch x86_64" \
>> --with-system-zlib \
>> --with-blas='-framework Accelerate' \
>> --with-lapack \
>> CPPFLAGS="-D__ACCELERATE__ \
>>
LERATE__ \
> > --enable-R-framework=no \
> > --enable-memory-profiling \
> > --enable-R-shlib
> >
> >
> > I never had any problems anymore with missing fortran compilers on OS X
> >
> > Hope that helps,
> >
> > cheers, jo
> >
> >>
udwig
Geistlinger [ludwig.geistlin...@bio.ifi.lmu.de]
Sent: Wednesday, November 18, 2015 8:46 AM
To: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Troubles using R/Bioc-devel with Mac OS X El Capitan
10.11.1
While I am following Jo's suggestions on installing gcc via homebrew on my
mac lap
> that might be causing problems; you'll definitely want the head of svn
>> trunk rather than a snapshot.
>>
>> Martin
>>
>> From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Ludwig
>> Geistlinger [l
