Re: [ccp4bb] ccp4MG- selecting h-bonds

2007-06-06 Thread Stuart McNicholas
Kendall Nettles wrote: I have a question about how to show certain h-bonds with CCP4MG. I’d like to show a specific bond between an Arg and Glu, but not other H-bonds made by the Arg. How can I do this? Thanks! Kendall Dear Kendall, In the first and third columns in the display table you

[ccp4bb] EMBL Grenoble Team Leader: Synchrotron Methods for Structural Biology

2007-06-06 Thread Stephen Cusack
*EMBL Grenoble Team Leader: Synchrotron Methods for Structural Biology Job Description*: We are looking for a structural biologist who has a focus on advanced crystallographic methods and instrumentation, particularly with relation to synchrotron radiation. The appointed Team Leader will

[ccp4bb] EMBL Grenoble Staff Scientist : New SAXS Beamline on ID14-EH3 at the ESRF

2007-06-06 Thread Stephen Cusack
*EMBL Grenoble Staff Scientist : New SAXS Beamline on ID14-EH3 at the ESRF Job description:* A scientist is required to join a team within the Partnership for Structural Biology (EMBL, ESRF, ILL and IBS, http://psb.esrf.fr/) which is establishing a unique and integrated SAXS-SANS platform,

Re: [ccp4bb] refmac fails on iodine ions

2007-06-06 Thread Eleanor Dodson
Two things I think 1) I is a metal so you need to move the atom name 1 space to the left - more like this: ATOM 2838 O HOH W 102 6.018 39.720 31.127 1.00 21.43 O ATOM 2839 I I B 1 19.956 22.770 18.597 1.00 30.00 I And the monomer library

Re: [ccp4bb] refmac fails on iodine ions

2007-06-06 Thread Garib Murshudov
Residue name of iodine should IOD. Otherwsie there is a clash of names with some other residue names (ionisine) Garib On 6 Jun 2007, at 16:56, [EMAIL PROTECTED] wrote: Dear All, I am having trouble with refmac dictionaries when refining a structure that contains an iodine ion. the PDB

[ccp4bb] Drug Discovery Workshop, Oxford, September 10-14

2007-06-06 Thread barry . hardy
I am pleased to announce that we will be holding the hands-on eCheminfoDrug Discovery Workshop week a second time this year in Oxford the weekof 10-14 September. First option on places will go to the waiting list fromthe June workshop but there nevertheless still are additional places available.

Re: [ccp4bb] refmac fails on iodine ions

2007-06-06 Thread Judith Murray-Rust
Dear refmac experts, following on from the iodide ion question, If I ask coot to get IOD, it lines up the I with C of CA in pdb file. Good. But to tell refmac that it is an iodide ion (not a metal) and get the correct scattering factor, presumably the atom type should be changed to I- ?? or have I