Hi Joe,
as both a contributor to the data and a user of the PDB files, I think you
are a bit harsh in the general extrapolation of your frustration with PDB.
I have communicated with the PDB folks both at Rutgers
and at EBI extensively about many of the shortcomings in both deposition
and data
Does it matter what the PDB use? They will export PDB and mmCIF for us
to use, so what they use internally doesn't matter. (IIUC the EBI uses SQL).
From my perspective as a developer I am not bothered in the slightest
whether we use PDB or mmCIF, because I read everything through MMDB
which
Dear Colleagues,
The agenda for the imgCIF workshops in conjunction with
BSR 2007 in Manchester and at Diamond has been posted at:
http://www.medsbio.org/meetings/BSR_2007_imgCIF_Workshop.html
We hope you can join us.
The BSR 2007 meeting organizers have asked me to urge anyone who
===
Lawrence Berkeley National Laboratory
Computational Postdoctoral Fellow
===
Computational Postdoctoral Fellow
Job ID:
University of Southern California
Molecular and Computational Biology, Department of Chemistry, Norris Cancer
Center
Postdoctoral/Research Associate positions are available for studying the
structure and function of receptor-ligand, protein-protein, and protein-DNA
complexes involved in
Hi all,
I'm using molrep with an MTZ file as input, so according to the manual I
should end up with a formatted CIFF file with the F_observed, but I only get
a pdb file for the coordinates. Any idea of what I'm doing wrong?
Thanks in advance,
Cynthia
Hi Sreeram,
Ironically IISc Bangalore, your host institute has the server that
exactly does what you want and more!
The paper has just been published in the Nucleic Acid Research.
Tina KG, Bhadra R, Srinivasan N.
PIC: Protein Interactions Calculator.
Nucleic Acids Res. 2007 Jul 1;35(Web
*BIOPHYSICIST*
Job # 20882
The Physical Biosciences Division of LBNL is accepting applications for
a biophysicist be a part of an interdisciplinary team to help operate,
maintain, and improve the small angle X-ray scattering (SAXS) station in
the SIBYLS (12.3.1) beamline at the Advanced Light
Dear All -
before I code ahead - is there a simple program/script available where I can
read
in a map and it gives me a basic 1d density histogram (or the tabular
data at least) in return?
Thx, br
-
Bernhard Rupp
Hi Bernard, it this is relatively easy. Copy this text:
#phil __ON__
xmanip {
input {
xray_data {
file_name = porin.mtz
labels = FOFCWT
name = map_coef
write_out =False
}
}
parameters {
action = *manipulate_miller
manipulate_miller {
task = *custom
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