Re: [ccp4bb] Link two proteins into one polypeptide

2009-04-03 Thread James Stroud
I recently had some success in this area. My approach was to get lucky when I guessed the linker. In this case, my linker became ordered which seemed to help my fusion construct settle down enough to exhibit density. My linker sequence came was (approximately) alternating hydrophilic and

Re: [ccp4bb] CCP4 tcl installation problem (mac)

2009-04-03 Thread Simon Kolstoe
Dear ccp4bb, Thanks for the help. To summarise: 1) CCP4's tcl/tk installs into /usr/local/X11/bin 2) To point imosflm to this version of Tcl/Tk the line export MOSFLM_WISH=/usr/local/X11/bin/wish8.4 needs to be in a file called .bash_profile NOT .profile for some reason (but not if you are

Re: [ccp4bb] Glycerol for crystal screens

2009-04-03 Thread Masters, Eugene
Matt, Your best bet would be to purchase the actual well condition from the manufacturer. I know that both Hampton and Emerald can sell you a larger quantity of what comes premixed in the screen. I am sure other manufacturers can do the same. If you are lucky they might be able to match the

[ccp4bb] How to loop up crystal from AmSO4.

2009-04-03 Thread HanJie_HCT Tai
Hi, I have a protein-DNA complex grown in 30 -40% MPD/0.2M Ammonium sulfate/5% PEG 400/ 0.1M Tris (8.5). I believe that 30%MPD above does not require any cryoprotectant but i hv a problem to loop a crystal up. The crystal always sticks with AmSO4. I tried to add 2ul up to 6ul

Re: [ccp4bb] How to loop up crystal from AmSO4.

2009-04-03 Thread junfeng liu
One way to do that is lower the concentration of AS form 0.2 to 0 or as low as you can . This is depended on the xtal's stability . You can transfer them directly or step by step. Otherwise you can try to add water around the drop to increase the humility or cover the drop by oil. Good luck!

Re: [ccp4bb] How to loop up crystal from AmSO4.

2009-04-03 Thread James Holton
If you want to get rid of mother liquid around crystal, mount it in oil. Howerver, what is wrong with NH4SO4? If your crystal can tolerate near-saturated NH4SO4, it is a cryoprotectant all by itself. -James Holton MAD Scientist HanJie_HCT Tai wrote: Hi, I have a protein-DNA complex

Re: [ccp4bb] CCP4 tcl installation problem (mac)

2009-04-03 Thread William G. Scott
On Apr 3, 2009, at 3:05 AM, Simon Kolstoe wrote: 2) To point imosflm to this version of Tcl/Tk the line export MOSFLM_WISH=/usr/local/X11/bin/wish8.4 needs to be in a file called .bash_profile NOT .profile for some reason (but not if you are using an X terminal in which case you need to

[ccp4bb] Postdoc position at the MRC Laboratory of Molecular Biology, Cambridge

2009-04-03 Thread Murray Stewart
Postdoctoral position at the MRC Laboratory of Molecular Biology, Cambridge, UK (closing date April 17, 2009) Dr Murray Stewart is seeking a postdoctoral researcher to work on the structure and function of macromolecules involved in nuclear transport and cell division. The Stewart group

Re: [ccp4bb] How to loop up crystal from AmSO4.

2009-04-03 Thread HanJie_HCT Tai
In the drop, the amSO4 becomes/casuses precipitate (I guess). The crystals were grown from the precipitate within a few days. When I looped up the crystal the precipitate was also looped up. And I don't know whether AmSO4 is a cryoprotectant or not. When I freeze the crystal in LN, the

Re: [ccp4bb] How to loop up crystal from AmSO4.

2009-04-03 Thread Roger Rowlett
I would think 30% MPD or more should normally be enough to cryoprotect. If that is not the case, then you can always supplement with additional MPD, glycerol, or glucose. If I understand correctly, your crystals are forming in the presence of some additional protein precipitate? If so, you

[ccp4bb] chiral volume target value

2009-04-03 Thread Bernhard Rupp
Dear All, assuming the chiral volume definition with r() a Cartesian position vector Vc = [r(N)-r(Ca)]*([r(C)-r(Ca)]x[r(Cb)-r(Ca)]) I always get about -0.65 A**3 Is this correct? Are there any target values? In a SHELX manual I read + 2.5 for the chiral volume - seems to be different. (not