Dear BB,
Using scala in version 6.1.3 via ccp4i 2.0.6 on a linux box I run into
the following Database Access Failure message:
This instance of CCP4i no longer has control of the current database.
This is probably because another CCP4i is running and has taken control
of the database over
Dear Rex,
PDBeMotif is an opensource search tool which works with many motifs as
3D structural as sequence, it can search for ligand environment and
perform 3D search for similar cliffs in proteins.
The tool creates a relational database, it has a data loader and a
search interface.
The
James,
caseB was lossy compressed.
It is 10% smaller when compressed (gzip, bzip2), so it contains
significantly less information.
cheers,
Hans
James Holton schreef:
Ian Tickle wrote:
I found an old e-mail from James Holton where he suggested lossy
compression for diffraction images (as
So far I have gotten several votes based on the lossless compression
ratio of the images, but, before I reveal the answer to the CCP4BB I
remind everyone that the LOSSY compression ratio of the compressed
images is 34-fold! So bzip2 and gzip are now incredibly inefficient
methods of storage
We would like to use Coot to fix up the geometry between the backbone and
the covalently bound chromophore within GFP variants, but our efforts to
convince Coot to connect the polypeptide and the chromophore have thus far
failed. This includes using MAKECIF to generate a new geometry library
Hi Kyle,
Are you refining with TLS? If so, then the default output will
be the residual B-factors. To get the full B-factors you need to
add the TLS component to the residual B's. This can be done
by re-running your refmac job with the keyword
TLSO ADDU
Note that this version of refmac will
