Dear Pavel:
Thanks a lot! I will try phenix.refine!
Best Regards, Hailaing
> Hi Hailiang,
>
> you didn't specify which program you are using...
>
> For example, you can do it in phenix.refine:
>
> phenix.refine model.pdb data.mtz strategy=individual_adp
> adp.individual.iso="chain A and resseq
Interhlx may be what you are looking for
http://nmr.uhnres.utoronto.ca/ikura/resources/data+sw/interhlx/
> Dear all,
>I want to compare the conformational
change of two similar structures,
> using one alpha helix as the
reference. Then, how can I get a vector that
> can represent both
the
Hi Hailiang,
you didn't specify which program you are using...
For example, you can do it in phenix.refine:
phenix.refine model.pdb data.mtz strategy=individual_adp
adp.individual.iso="chain A and resseq 123"
which will refine isotropic ADPs for residue number 123 in chain A only, or
pheni
Hi there:
For a PDB with B values refined, if I modify/addto its local structure
(mutation, add 1 residue...), is there any way I can refine the B values
only for the modified/added structure while keeping already refined B
values unchanged?
Thanks!
Best Regards, Hailiang
I don't know of any standard programs that do this, but I have a couple of
programs that do this sort of thing, using a "standard" helix as a reference
and the clipper libraries. I could send you the code if you like, though you'd
probably have to hack them to do exactly what you want (I found t
Dear all,
I want to compare the conformational change of two similar structures,
using one alpha helix as the reference. Then, how can I get a vector that
can represent both the position and direction of the helix? Is there any
well-known software can do this？
Or, should I build a cylinder mo
