[ccp4bb] REXS2011 Registration deadline May 1st

Dear Colleagues, The REXS2011 registration deadline is approaching; May 1st 2011. The website is:- http://rexs2011.grenoble.cnrs.fr/ Aim of the conference:- To bring together young and experienced scientists from different fields in condensed matter to share their experience on the application

[ccp4bb] Jelly-body refinement

I know that refmac5 can run Jelly-body refinement for low resolution structure, but how can I update my ccp4i to get the jelly-body refinement? Thanks for all your suggestion.

[ccp4bb] fixing the slab view in Coot

Hi All, Does anyone know how to fix the default view mode in Coot, where things disappear from your view when you zoom in on them?

Re: [ccp4bb] fixing the slab view in Coot

On Mon, 2011-04-25 at 09:23 -0400, Michael Murphy wrote: Hi All, Does anyone know how to fix the default view mode in Coot, where things disappear from your view when you zoom in on them? Have you looked at this http://www.biop.ox.ac.uk/coot/doc/coot.html#Clipping-Manipulation -- Coot

Re: [ccp4bb] Jelly-body refinement

by adding new external keywords as described as in the PDF described by Garib N Murshudov www.ccp4.ac.uk/schools/China-2011/talks/refmac_Shanghai.pdf Padayatti PS On Mon, Apr 25, 2011 at 5:19 AM, Zhipu Luo zhipu...@yahoo.com wrote: I know that refmac5 can run Jelly-body refinement for low

Re: [ccp4bb] renumbering amino acid residues in a pdb file

Hi Michael, another option: phenix.pdbtools fab.pdb renumber_residues=true that will re-number residues in all chains. Pavel. On Mon, Apr 25, 2011 at 9:50 AM, Michael Murphy pn1...@gmail.com wrote: Hi All, I have a pdb file of a single domain from a protein. The amino acid

[ccp4bb] For developers

Windows CCP4i: The log (attached) for mtz file to user conversion states a format error, when in fact the output file was locked by another application. Format is ok. Not tragic, but confusing. Best regards, BR - Bernhard Rupp 001

Re: [ccp4bb] ligand geometry evaluation

Wolfram, is there a program that, given ligand model coordinates and a ligand library as input, will produce a list of deviations of bond angles and distances from the library values? yes, phenix.pdb_interpretation model.pdb write_geo_files=true does exactly this: reports model and ideal

[ccp4bb] about the working solution

hi,everyone, Sorry for the off-topic question.I got two many crystals in the drop with long thin needle shape and crossed , after optimization, no big change appeared, and I got only a few needle clusters in the drop at most times. which one is better for next optimization step and suitale to be

Re: [ccp4bb] about the working solution

Hi i also faced this type of problem with my protein. i used additive screen for getting some thick needles and then with that condition i used seeding approach to get thick single crystal. try to use micro seeding with this . i used micro dilution or streak seeding for this. for seeding try to