I should maybe add some code to orthonormalise the matrix if it's not too far
off (which would be approximate). I haven't looked at this program for a long
time (nor indeed used it), so don't hold your breath
Phil
On 1 Apr 2015, at 22:52, Shane Caldwell wrote:
> Hi ccp4bb,
>
> I'm trying to
the test limit is perhaps over-tight
data eps/0.0001/
Phil
On 2 Apr 2015, at 00:34, Dale Tronrud wrote:
> I think you are on the right track - There are not enough decimal
> points in your matrix elements to pass the orthonormal test. This test
> checks that the length of each row (x^2+y^2
Dear CCP4 Users
An update for the CCP4-6.5 series has just been released, consisting
of the following changes
* ccp4-progs
- rwcontents: support for strict NCS records, via pdb header
* blend
- update to 0.6.3
* ccp4mg
- addition of pdbview (except windows)
* pointless
- Bug fixes
- update to
Dear All
for the record, this is, of course, Update 006
Charles
On 14 Mar 2015, at 10:51, Charles Ballard wrote:
> Dear CCP4 Users
>
> An update for the CCP4-6.5 series has just been released, consisting
> of the following changes
>
> * ccp4-progs
> - areaimol - bug fixes
> - r500 - update=
>
This matrix-renormalizer comes from WHAT IF. Feel free to use it any way
you want:
SUBROUTINE GVSREN (RMAT)
C+++
C---
C
C RMAT IS
On Wed, 1 Apr 2015 17:52:44 -0400, Shane Caldwell
wrote:
>Hi ccp4bb,
>
>I'm trying to solve a problem I never quite figured out in the past. I'd
>like to use the *sortwater* utility to send my picked waters to various
>protein chains, and to give them the same residue number if they are
>NCS-equ
Hello everyone,
I am planing to buy a new Mac laptop (price no bar) which will let me run
all xtallographic (CCP4 and Phenix) and reasonable Rosetta Molecular
Modelling (1000 to 1 decoys) softwares smoothly.
What in your opinion is the best configuration. (RAM, memory, number and
speed of pro
Kay and others,
I think Quadro 5000 available @
http://www.amazon.com/PNY-VCQ5000-PB-DisplayPort-Profesional-Graphics/dp/B003X26T7K
is a better option both price wise and need of transforming the output into
3-pin mini DIN. Having said that I should mention difference: the memory is
2.5GB for 50
Hi Ivan,
Being in the same boat, I have investigated a bit. It seems to be a straight trade-off between more processing power, more RAM and less partability Macbook, Macbook Air, 13" Macbook Pro, 15" Macbook Pro.
For running Rosetta I think you will be thankful for the faster processors and extra
You two should absolutely invest in the 1TB SSD option as well, I have
essentially the machine you describe, but it is now already 14 months old. So
the newer models will be maybe 30% more powerful in overall performance.
The geek bench score of my Macpro 2010 (48GB RAM, dual hexa core) correspon
Dear Mac Lovers:
I would have to agree with Jurgen with SSD drives. These fast drives
have breathed new life into my old Macs (2011 Macbook Pro, 2009 Mac mini,
and yes a 2006 Mac Pro (has 8 cores and just keeps running)).
In addition, all these Macs are maxed out with RAM.
Cheers,
Scott
*
On 04/01/2015 08:47 PM, Shane Caldwell wrote:
I guess the next, probably more general question for the bb is: which utilities
export an NCS transformation matrix with more precision?
TAJones' "O" program allows you to specify output format like
write .LSQ_RT_m2m ncs.odb (3f16.10)
which gives
Be aware though, the option 3-pin + USB for Nvidia 3D Vision 2 glasses
is not running/supported under Linux!
For linux boxes and Nvidia 3D Vision 2 glasses:
You have to buy an 120Hz ASUS VG287HR (there is no other useful option
in my opinion at the moment) and whatever quadro card you buy, make
Keep in mind the updated 15" MacBook Pro is slated to come out soon (sounds
like early summer). Probably won't have more RAM but is supposed to have a
new processor. If you can hold off for a couple months I would suggest
waiting as these haven't been updated in almost a year.
Rob
On Thu, Apr 2,
After Kay send me an email today to have a look at the wiki at
http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Stereo to
add my findings, I researched things further.
I remember I wrote to the ccp4bb March 1st, 2013, asking about Nvidia 3D
Vision under Linux via USB/3-pin because b
Great, so for stereo 10 to work under Linux you compiled a Linux kernel
built with USB device filesystem (usbfs) and USB 2.0 support?
I see you did not implement the following, Option "3DVisionUSBPath"
"/sys/bus/usb/devices/1-1" , right?
Jeroen
Am 02.04.15 um 23:31 schrieb Lukasz Salwinski:
On 04/02/2015 02:47 PM, mesters wrote:
Great, so for stereo 10 to work under Linux you compiled a Linux
kernel built with USB device filesystem (usbfs) and USB 2.0 support?
nope... I'm just using stock Centos 6.6 (installed, quite a while ago,
as version 6.3 and occasionally updated) and a rela
On Thursday, 02 April, 2015 23:47:12 mesters wrote:
> Great, so for stereo 10 to work under Linux you compiled a Linux kernel
> built with USB device filesystem (usbfs) and USB 2.0 support?
usbfs was removed from linux starting with kernel version 3.5 (July 2012).
Some linux distros with "exte
Shane,
After you define which segments share proper or improper all NCS their
parameters in MAIN environment, they will be calculated and stored in such
macro files.
$ cat mol_A_to_B.com
! SAVING RMS FIT DATA:
set matrix MAT_ROT number -
0.959598 -0.031620 -0.279592 -
-0.029443 0.97
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