We often use ImageJ for looking at electron diffraction images, and do indeed
benefit from the plethora of tools it implements. The necessary tools to
convert to and from formats that ImageJ understands are quite trivial, but we
don’t have a plugin (yet?) nor have have played with anything
I am really sorry to hear this. May his soul rest in peace.
Ranti Dev Shukla,
Doctoral fellow,
Structural Biology laboratory,
Chonnam National University,
Gwangju, South Korea.
On Wed, Apr 29, 2015 at 7:32 AM, Ho,Shing shing...@colostate.edu wrote:
It is with great sadness
It is with great sadness to announce that Dr. Alexander Rich, Sedgwick
Professor of Biophysics at MIT, passed away on Monday April 27, 2015 at
Massachusetts General Hospital – he was 90.
Alex, a member of the RNA tie club, contributed significantly to our
understanding of RNA and DNA structure
Has anybody tried imageJ/FIJI for looking at diffraction images? There are a
vast amount of processing tools therein, and it could make some things really
easy. I suspect one could look at the data by opening images as raw and then
specifying the properties of the image in the resultant menu.
Or use edstats in CCP4 - gives lots of statistics and a good evaluation of
fit
Eleanor
On 27 April 2015 at 16:26, Gurusaran Manickam satnam...@gmail.com wrote:
Dear Monica,
We can also, perhaps, most helpfully quote from our forthcoming article in
J Appl Cryst, Volume 48, Part 3 (June
Would it not be a good idea to include EDSTATS in ccp4i? I couldn't find it there.
Boaz
Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion University of the Negev
Beer-Sheva 84105
Israel
E-mail: bshaa...@bgu.ac.il
Phone: 972-8-647-2220Skype: boaz.shaanan
Fax: 972-8-647-2992
I am trying to convert XDS file into something that CCP4 would recognize
while keeping reflections unmerged. Hard to believe but it's not working:
the keyword MERGE=FALSE is not recognized and the default TRUE is being
used no matter what I do:
* XDSCONV * (VERSION March 1, 2015
It is probably sensible to download the structure factors and run refmac. I
don't really trust the deposited map coefficients
eleanor
On 28 April 2015 at 11:08, Takanori Nakane
takanori.nak...@bs.s.u-tokyo.ac.jp wrote:
Dear Andrew,
This is not very CCP4-way, but you can use:
*Scientist II, Structural Biology - Crystallization-150257*
AbbVie (NYSE:ABBV) is a global, research-based biopharmaceutical company
formed in 2013 following separation from Abbott Laboratories. The company's
mission is to use its expertise, dedicated people and unique approach to
innovation
Hi,
I doubt you have a TaBr cluster bound in your soaks.
You'd expect a strong anomalous signal from cluster compounds (that's what they
are made for) and you can easily get a low resolution anomalous signal from a
few dislocated HA in the solvent channels, especially if you don't counter
Some software enables overlay of a batch of images so that you simulate the
classical crude phi slicing and get visible patterns. I think we tried with
d*Trek.
Jan
On Tue, Apr 28, 2015 at 9:20 AM, Graeme Winter graeme.win...@gmail.com
wrote:
Looking at PAD images is something we have had to
Dear Andrew,
This is not very CCP4-way, but you can use:
phenix.fetch_pdb --maps 4wz7
It took about 10 minutes on my PC.
Best regards,
Takanori Nakane
On 2015年04月28日 18:35, Andrew Leslie wrote:
I am trying to get coordinates and maps into COOT for a PDB entry that is only
in mmcif format.
Hi
In iMosflm we automatically blur the zoomed out image for Pilatus (not yet for
Eiger or ADSC-PAD) to make it easier to see the spots on these images.
It's also possible to sum up to 20 images (for viewing) in iMosflm (again, for
Pilatus). We'll add this functionality for the other
I am trying to get coordinates and maps into COOT for a PDB entry that is only
in mmcif format.
If I select any of the Fetch PDB … options in COOT, I get the following error
message:
DEBUG:: in get-url-str: 4wz7
http://www.ebi.ac.uk/pdbe-srv/view/files/4wz7.ent; pdb
Can you feed your unmerged MAD data into Pointless/ Aimless? (It will take
mtzs or XDS or unmerged SCA files as input)
The best plots in my experience to indicate whether you have an anomalous
scatterer bound are the CCanom between the different wave lenths. If these
give you CCs 0.6 for even the
Looking at PAD images is something we have had to get used to at Diamond,
and sometimes it takes some tweaking to get a really good idea of what the
images actually look like. This is a challenge if you measure the data
properly with fine slicing low dose...
One thing which really helps is to
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