Re: [ccp4bb] distorted NRQ in JLigand 1.0.40

Thanks Andrey, it seems the sbgrid distribution is a couple of updates behind. On Thu, May 28, 2015 at 8:32 AM, Andrey Lebedev wrote: > > Dear Kevin > > The bug in refmac which was causing this is fixed in ccp4-6.5.010. > So please apply the two last updates and try again. Does it work normally

[ccp4bb] Announcing the 9th International Workshop on X-ray Radiation Damage to Biological Crystalline Samples, March 9-11 2016, Lund, Sweden

9th International Workshop on X-ray Radiation Damage to Biological Crystalline Samples March 9-11 2016, Lund, Sweden This series of workshops was originally concerned with the effects of radiation damage during investigation of protein structures by X-ray crystallography. Other techniques of st

Re: [ccp4bb] distorted NRQ in JLigand 1.0.40

Dear Kevin The bug in refmac which was causing this is fixed in ccp4-6.5.010. So please apply the two last updates and try again. Does it work normally now? Best regards Andrey On 26 May 2015, at 18:36, Kevin Jude wrote: > Dear colleagues, > I'm having an issue with a particular ligand in JLi

Re: [ccp4bb] problen in installing ProSMART

I'd recommend downloading the CCP4 suite, which contains pre-compiled ProSMART binaries: http://www.ccp4.ac.uk/download/index.php#os=mac Just download the Package Manager, which will automatically download and install CCP4 for you. The problem is that the -static-libgcc flag is specific to the g

Re: [ccp4bb] Difference in the substrate specificity for TMP and CMP

Hi Faisal, Lots of enzymes aren't too picky when it comes to nucleotide cofactors - depending on their physiological role, they may or may not select for high specificity. I'd encourage you to think about the opposite question - why are some enzymes highly specific for particular nucleosides? What

Re: [ccp4bb] CCP4 not working with OSX Yosemite version 10.10.3

As was reported before many times, the solution to the error you're getting is reinstalling Xquartz. Engin On 5/28/15 7:33 AM, saleem raza wrote: Hi, I recently updated the OSX on my IMAC to OSX Yosemite version 10.10.3. Since then I am unable to open CCP4. I have tried to reinstall the CCP

[ccp4bb] problen in installing ProSMART

Hi I am trying to install ProSMART (http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/), in MAC OXS Yosemite 10.10.3 It is giving following error. - --- Compiling prosmart_restrain clang: error: unsupported option '-static-libgcc' make: *** [restrain] Error 1 make: *** Waiting for un

Re: [ccp4bb] CCP4 not working with OSX Yosemite version 10.10.3

Hi Saleem, in my own experience with the yosemite update, after the update, i have had to do that : 1) Xcode via apple store (itunes) you have to create or use you apple ID etc... 2) Install XQuartz : http://xquartz.macosforge.org/downloads/SL/XQuartz-2.7.7.dmg 3) Install ccp4 : http://www.cc

[ccp4bb] Difference in the substrate specificity for TMP and CMP

Hello everyone I am working on a 5'-nucleotidase (Mg as a cofactor) and have a decent structure of the same at 2A resolution..While doing its biochemical characterization i found it hydrolyzing TMP: Thymine-5'-monophosphate at much higher rate than CMP Cytosine-5'-monophosphate (40 fold difference

Re: [ccp4bb] Hi

Dear All, I am able to do the superposition of the ligand with suplig.f program and superpose also do the same. Thank you for your valuable suggestions. regardsvijay  Vijay On Tuesday, 26 May 2015 6:11 PM, vijay srivastava wrote: Dear All, I want to superpose the nucleotide form o

[ccp4bb] Postdoctoral researcher (structural biology) and Ph.D. student (cell/molecular biology), Faculty of Biochemistry and Molecular Medicine, University of Oulu, Finland

One postdoctoral researcher (structural biology) and one Ph.D. student (cell/molecular biology) positions are available from 01.09.2015 onwards in the laboratory of Sakari Kellokumpu/Tuomo Glumoff at the Faculty of Biochemistry and Molecular Medicine, University of Oulu, Finland. Funding for the

[ccp4bb] Postdoc in Laurence Pearl's Lab

Postdoctoral Research Fellow in Structural Biology of Hsp90 complexes (Fixed term) Ref 143 School of Life Sciences - Genome Damage and Stability Centre Fixed term for 3 years, full time. Salary range: starting at £31,342 and rising to £37,394 per annum. Closing date for applications: 31 May 201

Re: [ccp4bb] Easy way to generate symmetry-related protein chains?

You might also be interested in the supercell pymol script, which generates all chains in the unit cell as opposed to within some radius of the asymmetric unit. -Spencer On Fri, May 22, 2015 at 2:45 PM, Roger Rowlett wrote: > If you mean generation