One postdoctoral research associate position is immediately available in Prof.
Limei Zhang’s group at the Dept. of Biochemistry and the Redox Biology Center,
University of Nebraska-Lincoln, USA (http://biochem.unl.edu). The research in
the Zhang Laboratory focuses on the structure-mechanism rela
Dear Colleagues,
as a result of the increased frequency of wildfires in California the power
company is taking steps to reduce risk under certain weather conditions. This
entails shutting down electricity to regions that are experiencing dry windy
conditions. We have been informed that the we
Dear Tim,
You are making a good point, but.
On 08/10/2019 15:19, Tim Gruene wrote:
Dear George,
as we discussed this issue back in 2016, 'cutting edge distribution' may be a
relative term. This discussion,
https://einsteinathome.org/content/vsyscall-now-disabled-latest-linux-distros,
ref
https://www.cnet.com/news/diamonception-miners-find-diamond-trapped-inside-another-diamond/
Diamonception: Miners find diamond trapped inside another diamond
--
===
All Things Serve the Beam
==
Dear George,
as we discussed this issue back in 2016, 'cutting edge distribution' may be a
relative term. This discussion,
https://einsteinathome.org/content/vsyscall-now-disabled-latest-linux-distros,
refers to 'ancient versions of glibc' where
the problem occurs. It seems to be solved with
Dear Isabel
On 08/10/2019 14:53, Isabel Uson wrote:
Dear Bernhard and Peter,
as Tim describes, changing the grub loader fixes the problem.
Unfortunately, this is not a viable solution. Many crystallographers do
not have root access on their systems. Their system administration staff
will ha
*Les Houches-TSRC Workshop on Protein Dynamics, June 7-12, 2020*
We cordially invite applications to participate in the 4th edition of
the Protein Dynamics Workshop to be held in Les Houches, close to
Chamonix/Mont Blanc, in the French Alps from June 7-12, 2020.
This workshop gathers about 70
Dear Bernhard and Peter,
as Tim describes, changing the grub loader fixes the problem. I have looked
into the changes to eliminate system calls and provide a version that would
work without changes to the system, they are relatively minor. SHELXE just
needs to eliminate calls to system time, pity
Dear George
On 08/10/2019 11:21, George Sheldrick wrote:
As explained in the attached email from Peter Keller, I was
deliberately preparing the binary Linux SHELX distribution using older
(2011) system libraries so that the programs would run on older
systems that many users are still using. U
> 1. Try our coiled-coil modelling server
> https://pharm.kuleuven.be/apps/biocryst/ccfold.php
Some more explanation here. This server runs our CCFold algorithm (Guzenko &
Strelkov (2017) Bioinformatics, article btx551). CCFold is a threading-type
algorithm which was specifically designed to mod
There is now another alternative. There are platforms for packaging
software with necessary libraries. PyMOL for example is available using
"snap".
https://www.mail-archive.com/ccp4bb@jiscmail.ac.uk/msg46623.html
On 2019-10-08 06:21, George Sheldrick wrote:
As explained in the attached email
Dear Tommi,
With coiled coils you certainly want to use the best search model possible.
Coiled coils are elongated structures and a small local inaccuracy of your
search model may result in large differences (in terms of overall rmsd) with
respect to the true structure. Two suggestions:
1. Try
As explained in the attached email from Peter Keller, I was deliberately
preparing the binary Linux SHELX distribution using older (2011) system
libraries so that the programs would run on older systems that many
users are still using. Unfortunately this means that they do not run on
some recen
HI Tim,
On Mon, 7 Oct 2019, Tim Gruene wrote:
Date: Mon, 07 Oct 2019 23:04:28 +0200
From: Tim Gruene
To: Peter Keller
Cc: CCP4BB@jiscmail.ac.uk
Subject: Re: [ccp4bb] Shelx and debian 10
@Peter: are you sure that without 'vsyscall=emulate' linux binaries need to be
dynamically linked? I w
Hi Tommi, as sent by Kay ARCIMBOLDO has a specific mode to solve coiled
coils (http://scripts.iucr.org/cgi-bin/paper?cb5097).
Here you can find the tutorial: http://chango.ibmb.csic.es/tutorial_coiled,
it explains how to launch it through the command line and a summary
explaining the improvements
Hi Tommi
Yes, AMPLE does well with coiled-coils. The QUARK route is the easiest
to try. In your position I would simply trim a bit of sequence off
either end. Maybe you can see homologs that are a bit shorter at one
terminus? In any case, that's unlikely to affect the modelling and we've
seen
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