Re: [ccp4bb] PAIREF, Anisotropy and STARANISO -- a small correction

2022-10-05 Thread Gerard Bricogne
Dear Petr and CCP4BB readers, A lapse of attention led to a possibly obscure sentence: in the first paragraph of our answer, the sentence "The input reflections to STARANISO that are not present ..." should, for the avoidance of doubt, read: "The input reflections to STARANISO that are not

Re: [ccp4bb] PAIREF, Anisotropy and STARANISO

2022-10-05 Thread Gerard Bricogne
Dear Petr, Thank you for your reply and for inviting us to address some points! Please find our replies below, "interleaved" with your questions. On Tue, Oct 04, 2022 at 04:41:58PM +, Petr Kolenko wrote: > Dear Gerard, > A great remark! Thank you for starting this thread separately. I

[ccp4bb] AW: [ccp4bb] PAIREF, Anisotropy and STARANISO

2022-10-05 Thread Schreuder, Herman /DE
Dear Martin, The concept of systematic absences is usually used for absences caused by the crystal packing, e.g. glide planes etc. I guess that what you meant are absences due to anisotropic cutoff. In the past, to get an Rmerge is low as possible, people would cut there data at 2sigma, or

Re: [ccp4bb] PAIREF, Anisotropy and STARANISO

2022-10-05 Thread Martin Malý
Dear colleagues, Firstly, I would like to thank Clemens, Claus, Ian and Gerard for the very interesting analysis and remarks! Similarly to Frank, I am wondering "whether any refinement program properly extracts the high-resolution signal when there's anisotropy". Poor completeness in high

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Re: [ccp4bb] PAIREF, Anisotropy and STARANISO

2022-10-05 Thread Frank von Delft
Gerard, that's fascinating, thanks for the explanation. I conclude in summary:  nobody (including you) yet knows whether any refinement program properly extracts the high-resolution signal when there's anisotropy. My (similar) question a few days ago was: /"Is that because of the

Re: [ccp4bb] PAIREF, Anisotropy and STARANISO

2022-10-05 Thread vincent Chaptal
Dear Clemens, Claus, Ian and Gerard, since you ask for crowd sourcing, I'll give you my thoughts. I think the term "anisotropy" is used in many ways to describe very different events. It actually means the opposite of isotropy, so it is coviniently used to describe a difference in resolution