[ccp4bb] Coot Delete Item on MacOS Ventura

2023-03-31 Thread Paul Emsley
Last week I was using 13.2 and could reproduce the snap iconification on delete item. This morning I updated to 13.3 and the iconification problem is no more - so the update fixed it. Apple didn't mention XQuartz or Coot in the release notes (fwiw). Paul.

[ccp4bb] new PDB file format

2023-03-31 Thread James Holton
Anyone who has ever had to lecture a student for writing their unit cell lengths to dozens of decimal places is going to love the new PDB format.  It is more compact, more realistic, and less misleading to the poor, downstream consumers of structural data. Only a few structures in the PDB are

Re: [ccp4bb] To Trim or Not to To Trim

2023-03-31 Thread James Holton
I have never met a computational chemist who did not "notice" when a side chain is modeled as more than one conformer. -James Holton MAD Scientist On 3/31/2023 8:31 AM, Olga Moroz wrote: Hi everyone, I always thought it is better to truncate so that biologists looking at the structures are

Re: [ccp4bb] To Trim or Not to To Trim

2023-03-31 Thread Olga Moroz
Hi everyone, I always thought it is better to truncate so that biologists looking at the structures are not misled? Not sure it the best aproach though... Olga > On 10 Mar 2023, at 02:45, Bernhard Lechtenberg > <968307750321-dmarc-requ...@jiscmail.ac.uk> wrote: > > Hi Rhys, > > I am

Re: [ccp4bb] To Trim or Not to To Trim

2023-03-31 Thread Edwin Pozharski
The most pertinent question is, of course, what is the average frequency of the disordered chain controversy flareup. Once we figure that out, some profound mysteries of the Universe will reveal themselves. I am betting it's a simple combination of the solar cycle, inflation adjusted price of a

Re: [ccp4bb] To Trim or Not to To Trim

2023-03-31 Thread David A Case
On Tue, Mar 28, 2023, James Holton wrote: Members of an ensemble spread out over a supercell are equivalent to a conventional multi-conformer model, but only when it comes to the density derived from the coordinate atoms alone.  They are not the same when it comes to bulk solvent and also

[ccp4bb] Crystallography course in Oulu, Finland May29-June2

2023-03-31 Thread Lari Lehtiö
Dear colleagues, We are organizing an Instruct-ERIC course in Oulu on X-ray, neutron and electron crystallography. Please see the details in the web pages. https://instruct-eric.org/events/instruct-eric-course-on-macromolecular-x-ray-electron-and-neutron-crystallography-2023/

Re: [ccp4bb] glass capillaries

2023-03-31 Thread Ulrike Demmer
The capillaries have already found a new owner ! Ulrike To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of

[ccp4bb] PostDoc position in time-resolved crystallography

2023-03-31 Thread Schulz, Eike-Christian
Dear all, There is an opening for a PostDoc position in my group. Funding is generously provided by an ERC Synergy Grant for the DynaPLIX project, wherein we aim to understand the dynamics of protein ligand interaction via an integrative approach combining NMR-spectroscopy (Mikael Akke, Lund