101 to NLE11, then it should work.
>
> Le 26 oct. 2022 à 03:37, Jiang Xu a écrit :
>
> Hi Garib,
>Thank you for your reply. I edited the NLE.cif file in the CCP4 monomer
> library. You can see I successfully changed the group to L-peptide, as
> shown below:
> /Applicat
Hi Paul,
Thank you very much for your suggestions. It works.
Sincerely,
Jiang
On Wed, Oct 26, 2022 at 3:22 AM Paul Emsley
wrote:
>
> On 20/10/2022 02:06, Jiang Xu wrote:
> > Hi Garib,
> >I deleted the Met residue and imported the nle.cif file
>
>
> Import the di
it is from ccp4 version 7 series. There, our programs
> may have changed HN2 with H2.
> However, you should check if the group name for this entry is L-peptide.
> If it is not L-peptide then coot will not recognise it as L-peptide (as far
> as I know)
>
> Regards
> Garib
>
arib
>
> On 20 Oct 2022, at 02:06, Jiang Xu wrote:
>
> Hi Garib,
>I deleted the Met residue and imported the nle.cif file into the
> dictionary and checked the "create a molecule" box.I then used "real
> space refinement" to align it correctly with the e
dictionary" and hope that coot will recognise
> it as peptide. I attach nle.cif just in case
>
> Regards
> Garib
>
>
> On 19 Oct 2022, at 20:34, Jiang Xu wrote:
>
> Hello Guys,
>I have a question regarding how to change the standard amino acid in my
> struc
Hello Guys,
I have a question regarding how to change the standard amino acid in my
structure to Norleucine. It turned out that the one Methionine should be
Norleucine. I tried to use the coot's mutation method but didn't find
NLE(Norleucine) there. Any suggestions?
Thank you,
Best,
Jiang
Lin
d.
>
>
> See the pdb file for 6U6K
>
>
>
> Hope this helps
>
>
>
> J
>
>
>
> *From:* CCP4 bulletin board *On Behalf Of *Jiang
> Xu
> *Sent:* Thursday, 7 July 2022 10:15 AM
> *To:* CCP4BB@JISCMAIL.AC.UK
> *Subject:* [ccp4bb] circular peptide
. However in Coot I
could not make the peptide bond, the two terminals seem to repel each other
when I do real space refinement in coot and, couldn't form the peptide
bond. Any suggestions on how to do it?
Thank you,
Best,
Jiang Xu
Lin Chen Research Group
Molecular and Computational Biology
Department
has two hydrogen atoms, which should contain one hydrogen atom. So, how
to solve this problem?
[image: image.png]
Thank you,
Best,
Jiang Xu
Lin Chen's Research Group
University of Southern California
To unsubscribe from
Group
University of Southern California
On Wed, Jun 16, 2021 at 2:51 PM Jiang Xu wrote:
> Hello Phil,
>Thank you for the comments. I noticed that the ccp4 package I used was
> 7.0. After upgrading to the latest version, the problem was solved.
>I also have another question abou
t; I can look at this next week, to see if I can work out what is happening
>
> Phil
>
> Sent from my iPad
>
> On 16 Jun 2021, at 18:52, Jiang Xu wrote:
>
>
> Hello guys,
>I am having some problems running Aimless from the CCP4i packages. I
> want to scale w
one know what's
happening and how to solve this problem?
Thank you,
Best,
Jiang Xu
Lin Chen Research Group
University of Southern California
To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.a
tal packing", then I would not make any mistake if I call
> P64 space group crystal also as "six fold screw axis crystal packing",am I
> right?
> I am looking forward to getting a reply from you.
>
> --
>
> Date:Wed, 18 Jan 2017 19:4
the problem.
Thank you!
Best!
Jiang Xu
Department of Molecular and Computational Biology
University of Southern California
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