Re: [ccp4bb] structure (factor) amplitude

2009-01-12 Thread Jianghai Zhu
with each lattice-point. It is the amplitude, at unit distance, of the wave scattered by the unit group of s points. -- Jianghai Jianghai Zhu, PhD Immune Disease Institute Dept. of Pathology Harvard Medical School 3 Blackfan Circle, CLSB Boston, MA 02115 Tel: 617-713-8224 Fax

Re: [ccp4bb] structure (factor) amplitude

2009-01-12 Thread Jianghai Zhu
-0500, Jianghai Zhu wrote: JPK beats me on this one. Here is the quote from R. W. James, The Optical Principles of the Diffraction of X-rays. We shall call A the 'structure amplitude', a name introduced by Ewald, to denote the fact that its value depends essentially on the structure

Re: [ccp4bb] phases origin shift ( SOLUTIONS )

2008-06-07 Thread Jianghai Zhu
the shift for you, as long as you have some sort of phases for both cases. This'll only work though if the cell constants are close enough that you can actually merge the MTZ's sensibly. If that is not the case, you are really looking at a cross-crystal averaging calculation. Jianghai Zhu wrote: Hi All

Re: [ccp4bb] phases origin shift (SOLUTIONS)

2008-06-07 Thread Jianghai Zhu
shifted pdb as the reference. Now the reference phases and experimental phases have the same cell constants and space group, the resulting origin shifted experimental phases will not be distorted. -- Jianghai On Jun 6, 2008, at 12:01 PM, Jianghai Zhu wrote: Hi All, I have a data set

[ccp4bb] phases origin shift

2008-06-06 Thread Jianghai Zhu
Hi All, I have a data set with experimental phases. I would like to shift the origin of the phases so that it matches the origin of another data set and phases, which has different cell constants. Any suggestion of what tools has the ability to do this? i.e. shift the origin by (0.0,

Re: [ccp4bb] phases origin shift

2008-06-06 Thread Jianghai Zhu
the origin of phases to match another set --- http://solve.lanl.gov/Resolve/html_resolve_manual/resolve_sample_scripts.htm#offset_phases Regards, Mitch -Original Message- From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of Jianghai Zhu Sent: Friday, June 06, 2008 9:02 AM

[ccp4bb] refmac5.3 vs refmac5.4

2007-12-05 Thread Jianghai Zhu
rmsCHIRAL 0.015 1.150 0.004 The R and Rfree are very similar from these two versions of refmac5. Does refmac5.4 have different geometry weights from refmac5.3? Which one is more reasonable? Thanks. Jianghai +++ Jianghai Zhu, Ph.D CBR

Re: [ccp4bb] Kay Diederichs Email

2007-07-07 Thread Jianghai Zhu
I am using OS X 10.4.10, G4 powerbook. I have no problem with Kay's emails, just got a message with Unable to verify message signature. Jianghai On Jul 7, 2007, at 12:38 PM, James Stroud wrote: Hello All, I'm not trying to pick on Kay Diederichs here, but is anyone else having trouble