[ccp4bb] 25th Annual Structural Biology Symposium, May 2nd, Galveston TX - Registration is now OPEN

2020-03-03 Thread Mark A. White
Best regards, Mark A. White, Ph.D. Associate Professor of Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular Biophysics Macromolecular X-ray Laboratory, Basic Science Building, Room 6.658A

[ccp4bb] Cryo-EM Data Processing Workshop, May 6-9, 2019 - Structural Biology Symposium, May 4, 2019

2019-02-22 Thread Mark A. White
mic Resolution" Liang Tong, Ph.D., Columbia University "Structural Insights into RNA Processing and Quality Control" To register or for more information, visit http://scsb.utmb.edu/s

[ccp4bb] 24th Annual Structural Biology Symposium, May 4th, Galveston TX - Registration is now OPEN

2019-02-18 Thread Mark A. White
Columbia University "Structural Insights into RNA Processing and Quality Control" To register or for more information, visit http://scsb.utmb.edu/symposium -- Yours sincerely, Mark A. White, Ph.D. Associate Professor of Bioch

[ccp4bb] 23rd Annual SCSB Symposium, April 28th, Galveston Texas

2018-04-04 Thread Mark A. White
na University “Multiple Mechanisms for Assembly-Directed HBV Antivirals” To register or for more information, visit http://scsb.utmb.edu/symposium -- Yours sincerely, Mark A. White, Ph.D. Associate Professor of Biochemistry and Molecular Biology, M

[ccp4bb] UTMB Sealy Center for Structural Biology Symposium - May 6 - Register NOW

2017-04-17 Thread Mark A. White
You and your colleagues are cordially invited to join us for the 22nd Annual Structural Biology Symposium to be held at Levin Hall on the University of Texas Medical Branch Campus on beautiful Galveston Island on Saturday, May 6, 2017. The meeting is organized by the Sealy Center for Structural Bi

[ccp4bb] UTMB Sealy Center for Structural Biology Symposium - May 6 - Register NOW

2017-03-14 Thread Mark A. White
You and your colleagues are cordially invited to join us for the 22nd Annual Structural Biology Symposiumto be held at Levin Hall on the University of Texas Medical Branch Campus on beautiful Galveston Island on Saturday, May 6, 2017. The meeting is organized by the Sealy Center for Structural Bi

[ccp4bb] UTMB Sealy Center for Structural Biology Symposium - May 6 - Register NOW

2017-02-14 Thread Mark A. White
chool of Pharmacy Kylie Walters, Ph.D.,Center for Cancer Research, National Cancer Institute To register or for more information, visit http://www.scsb.utmb.edu/symposium -- Yours sincerely,

[ccp4bb] 20th Annual Symposium - May 2, 2015

2015-03-31 Thread Mark A. White
ture Matters” Registration is open www.scsb.utmb.edu/symposium -- Yours sincerely, Mark A. White, Ph.D. Associate Professor of Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular Biophysics Macromolecular X-ray Laboratory, Basic Sci

Re: [ccp4bb] cryo protection for low salt crystallization at 4 degrees

2015-03-03 Thread Mark A. White
. Do not forget to keep any ligand you use in the cryo-buffer, otherwise it may be soaked out of the crystal. Finally, looping into Paratone-N oil will always help in the flash-freezing process, and improve its reproducibility. Best regards, Mark -- Yours sincerely, Mark A. White, Ph.D. Ass

[ccp4bb] 20th Anniversary Structural Biology Symposium - Registration is OPEN

2015-02-17 Thread Mark A. White
. California, San Diego Robert D. Wells, Texas A&M Health Science Center http://www.scsb.utmb.edu/symposium Registration is open. -- Yours sincerely, Mark A. White, Ph.D. Associate Professor of Biochemistry and Molecular Biology, Man

Re: [ccp4bb] [off topic] Fitting unknown model in SAXS envelope

2015-02-02 Thread Mark A. White
e smallest fraction of contaminant can make all of these analyses moot. -- Yours sincerely, Mark A. White, Ph.D. Associate Professor of Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular Biophysics Macromolecular X-ray Laboratory, Basic Science Buil

[ccp4bb] Renumbering RNA

2014-04-08 Thread Mark A. White
? Thanks, Mark -- Yours sincerely, Mark A. White, Ph.D. Associate Professor of Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular Biophysics Macromolecular X-ray Laboratory, Basic Science Building, Room 6.660 C University of Texas Medical Branch

[ccp4bb] Register Now for the 19th Annual SCSB Symposium

2014-03-26 Thread Mark A. White
s of Age: Applications to HIV/AIDS, cancer and neuroscience” To register, visit http://scsb.utmb.edu/symposium -- Yours sincerely, Mark A. White, Ph.D. Associate Professor of Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and M

[ccp4bb] 3 Senior Structural Biology Faculty Positions Open

2013-04-17 Thread Mark A. White
sity. Candidates of all backgrounds are encouraged to apply. -- Yours sincerely, Mark A. White, Ph.D. Associate Professor of Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular Biophysics X-ray Crystallography Laboratory, Basic Science Building, Room 6.6

[ccp4bb] Three Senior Faculty Positions in X-ray Crystallography, Cryo-Electron Microscopy, and NMR

2012-05-30 Thread Mark A. White
irmative action institution that proudly values diversity. Candidates of all backgrounds are encouraged to apply. Faculty Positions * Cryo-Electron Microscopy: Announcement * NMR: Announcement * X-ray Crystallography: Announcement -- Yours sincerely, Mark A. White, Ph.D. A

Re: [ccp4bb] short step

2010-02-23 Thread Mark A. White
- > > When the Way is forgotten duty and justice appear; > > Then knowledge and wisdom are born along with hypocrisy. > > When harmonious relationships dissolve then respect and devotion arise; > > When a nation falls to chaos then loyalty and patriotism

Re: [ccp4bb] Distinguishing Between Na+ and H2O

2010-02-18 Thread Mark A. White
) but silver(I) compounds are usually insoluble, > La3+ is the same size as Na+, and LaCl3 nicely soluble, but obviously it > coordinates very differently. > > Tom Yours sincerely, Mark A. White, Ph.D. Assistant Professor of Biochemistry and Molecular Biology, Manager, Sealy Center for

[ccp4bb] Slow COOT with Fedora 12

2010-02-04 Thread Mark A. White
Radeon RV530 (Radeon X1600pro) kernel-PAE-2.6.31.12-174.2.3.fc12.i686 xorg-x11-server-Xorg-1.7.4-1.fc12.i686 # glxgears 8071 frames in 5.0 seconds = 1614.093 FPS 8105 frames in 5.0 seconds = 1620.857 FPS Yours sincerely, Mark A. White, Ph.D. Assistant Professor, Dept. Biochemistry and Molecular

[ccp4bb] 15th Annual Structural Biology Symposium

2010-02-01 Thread Mark A. White
Dear Colleague, You and your colleagues are cordially invited to join us for the 15th Annual Structural Biology Symposium to be held at the Hotel Galvez on beautiful Galveston Island on Friday, March 19th, 2010. The meeting is organized by the Sealy Center for Structural Biology & Molecular Biop

Re: [ccp4bb] configuration or install issue with tk

2009-12-14 Thread Mark A. White
ile "/usr/local/ccp4/ccp4-6.1.2//bin/ccp4i" line 1) > > The odd thing is that I can launch ccp4i just fine as a regular user, > but then of course I get the message about the first time ccp4i has > been run and the need to configure it, which requires administrator > level

Re: [ccp4bb] force display of sheet in PYMOL

2009-10-01 Thread Mark A. White
way? > Thanking you in advance... > > > Raja > > > > > > > > __________ > Try the new Yahoo! India Homepage. Click here. Yours sincerely, Mark A. White, Ph.D. Assistant Professor, Dept. Biochemistry and Molecular Biology, Manager, Sealy Center for Stru

Re: [ccp4bb] Bfactor as Measure of Presence

2009-05-06 Thread Mark A. White
b factor is 87, > how much confidence can I have about my interpretation of the maps? > > James Yours sincerely, Mark A. White, Ph.D. Assistant Professor, Dept. Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular Biophysics X-ray Crystallograp

[ccp4bb] 14th Annual Structural Biology Symposium, March 27th, 2009

2009-03-11 Thread Mark A. White
Biology and Molecular Biophysics Professor, Department of Biochemistry and Molecular Biology Vincent J. Hilser, Ph.D. Symposium Co-Chair Director, Sealy Center for Structural Biology and Molecular Biophysics Professor, Department of Biochemistry and Molecular Biology Yours sincerely, M

Re: [ccp4bb] .phs file conversion

2009-03-04 Thread Mark A. White
From: Mark A. White To: John Bruning Cc: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] .phs file conversion Date: Wed, 4 Mar 2009 14:16:47 -0600 John, The PHS file has the coefficients to make a map, along with the cell parameters, but is not itself a map. There are a few choices. 1) View

Re: [ccp4bb] unstable refinement

2009-02-13 Thread Mark A. White
xtraordinarily high b-factors. If > anyone has run into any other causes of unstable refinement, I would > like to hear about them. > > > Thanks, > John Bruning Yours sincerely, Mark A. White, Ph.D. Assistant Professor, Dept. Biochemistry and Molecular Biology, Manager, Se

[ccp4bb] 14th Annual Structural Biology Symposium, March 27th, 2009

2009-02-06 Thread Mark A. White
tor, Sealy Center for Structural Biology and Molecular Biophysics Professor, Department of Biochemistry and Molecular Biology Yours sincerely, Mark A. White, Ph.D. Assistant Professor, Dept. Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular Biop

[ccp4bb] Structural Biology Symposium Registration Deadline Approaching

2008-04-15 Thread Mark A. White
st Parlor Room 2024 Seawall Boulevard Galveston, TX 77555 Poster Awards Concluding Remarks Yours sincerely, Mark A. White, Ph.D. Assistant P

[ccp4bb] 13th Annual UTMB Sealy Center for Structural Biology Symposium

2008-02-12 Thread Mark A. White
hysics Professor Professor Department of Biochemistry and Molecular Biology Department of Biochemistry and Molecular Biology Yours sincerely, Mark A. White, Ph.D. Assistant Professor, Dept. Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular

Re: [ccp4bb] problems with map quality, refinement and R/Rfree

2007-10-19 Thread Mark A. White
e poly ala main chain. > > Frankly speaking, I do not know how to proceed further. I welcome any > kind of suggestions which could help us in this case. > > Regards > Joe Yours sincerely, Mark A. White, Ph.D. Assistant Professor, Dept. Biochemistry and Molecular Biology, Man

Re: [ccp4bb] auto-tracing programs

2007-07-31 Thread Mark A. White
e and correct by hand but when you are > doing this with phasing iteratively it would be interesting to hear opinions.. > thanks, > tommi > > Best Regards, Mark -_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_-_ Mark A. White, Ph.D.

Re: [ccp4bb] heavyatom soaking problem

2007-06-29 Thread Mark A. White
atom to bind to > protein.My protein needs high salt for stability (750mM NaCl) > > Please help with some suggestion!! Sincerely yours, Mark A. White, Ph.D. Assistant Professor, Dept. Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular Bioph

Re: [ccp4bb] Summary - Stop Refmac from refining B factors?

2007-04-19 Thread Mark A. White
gt; difference, what values I fill in there, the resulting > B-factors are always the same (but different from when I don't > use the TEMP keyword, and even "flatter"). Default for WBSCAL > is 1.0, I tried 10, 1.0, 0.1, 0.01, and the equivalent

Re: [ccp4bb] Stop Refmac from refining B factors?

2007-04-18 Thread Mark A. White
> > > > > > -------- > > > Mischa Machius, PhD > > Associate Professor > > UT Southwestern Medical Center at Dallas > > 5323 Harry

[ccp4bb] SCSB Structural Biology Symposium, May 18-19th, Galveston Texas

2007-04-17 Thread Mark A. White
Biology and Molecular Biophysics Molecular Biophysics Sincerely yours, Mark A. White, Ph.D. Assistant Professor, Dept. Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular Biophysics X-ray Crystallography Laboratory, Basic Science Building, Room 6.660 C U

[ccp4bb] SCSB Structural Biology Symposium, May 18-19th, Galveston Texas

2007-03-05 Thread Mark A. White
nd Molecular Biophysics Molecular Biophysics Sincerely yours, Mark A. White, Ph.D. Assistant Professor, Dept. Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular Biophysics X-ray Crystallography Laboratory, Basic Science Building, Room 6.660 C Univers

Re: [ccp4bb] MR in P1 space group

2007-02-21 Thread Mark A. White
with good statistics and the > solution from phaser is quite reasonable. > > Is it possible that P1 space group can be a problem during MR? Do you think > the > solution from Phaser is just wrong or did I miss something? > > Any suggestions will be helpful to me. > > Th

Re: [ccp4bb] Decent dataset from tiny needle crystals--but can't refine past a certain point

2007-02-15 Thread Mark A. White
; isn't too vague but I appreciate any help in advance and I can > elaborate if you're willing to help!! > > > ~ > Peter J Stogios > Ph.D. candidate, Privé Lab > Dept. of Medical Biophysics, University of Toronto > Toronto Medical Discoveries Tower (TMDT) at MaRS

Re: [ccp4bb] Fancy crystal, poor diffraction

2007-01-24 Thread Mark A. White
d similar problems, > are there any successful stories from these fancy poor crystals? Any > suggestions or references will be highly appreciated. > > Thanks in advance! > > Tiancen Hu > Shanghai Institute of Materia Medica > Rm. 2107, #555, ZuChongzhi Rd. > Shanghai